New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3323803 =NA (NA)4 (0.010)
+G		 3/110 NT NA intergenic (+48/+138) dacB/obgE D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair
?CP009273 = 3734462 NA (NA)intergenic (+144/+7) avtA/ysaA valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component

CGTTTACGCCGCATCCGGCATAAACAAAGCGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3323837‑3323803
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCT  <  CP009273/3734462‑3734400
                                   |                                                               
CGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTTCTCAACGCCGGAACAGTGCGg                                 >  1:34693427/1‑67
CGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGGTTCTCAACGCCGGAACAGTGCGg                                 >  1:18389987/1‑67
                       ACAAAGCGCACTGTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGT          >  1:2849350/1‑68
                            GCGCACTGTTCCGGCGTTTCGCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAAC      >  1:34186478/1‑67
                              GCACTGTTCCGGCGTTTATCAACGCCCGACCAGTGCGCGTTGTTTATGCCAGATGCGGCGTAAACG     >  1:6995361/1‑66
                               CACTGTTCCGGCGTTTCTCAACGCCGGCACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCT  >  1:39301124/1‑68
                                   |                                                               
CGTTTACGCCGCATCCGGCATAAACAAAGCGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3323837‑3323803
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCT  <  CP009273/3734462‑3734400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.