| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3323803 = | NA (NA) | 4 (0.010) +G |
3/110 | NT | NA | intergenic (+48/+138) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| ? | CP009273 | = 3734462 | NA (NA) | intergenic (+144/+7) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
Only 100 of 527 total aligned reads displayed.
ATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGC > CP009273/3734397‑3734526 | tAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAAc > 1:7893952/1‑68 (MQ=255) aaGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACg > 1:39203895/1‑68 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt > 1:25021467/1‑68 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:24624041/68‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:31074399/68‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:3959059/68‑1 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:10042985/1‑67 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:5547567/1‑67 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:6541577/1‑67 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:35167421/1‑67 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:12525005/1‑67 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:20694227/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:33482505/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:7413117/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:13834330/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:36201089/1‑68 (MQ=255) gTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGCGAAACGCCGGAAcagtgcgc > 1:34186478‑M2/1‑59 (MQ=255) ttACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGNCGGAAAACGTTTCaa < 1:14703613/67‑1 (MQ=255) tACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAAc < 1:1095124/68‑1 (MQ=255) aCGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACa > 1:39374960/1‑68 (MQ=255) aCGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACa > 1:13513012/1‑68 (MQ=255) cgccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAg > 1:17567885/1‑68 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg < 1:3135741/68‑1 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg < 1:3166864/68‑1 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAg > 1:6977319/1‑67 (MQ=255) tCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGctgctg < 1:9226117/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:21423101/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:26203741/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:20556072/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:13238861/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:11403503/68‑1 (MQ=255) tGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGcc < 1:7601742/68‑1 (MQ=255) gCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGt > 1:24291650/1‑68 (MQ=255) cctgtttgaaacgttTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACCGGCGGCTGCCGTAGcc < 1:8747849‑M1/53‑1 (MQ=255) aaCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCg > 1:38198497/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:19128653/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:18442344/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:15717559/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:14885096/1‑68 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATccc < 1:28509393/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:24150290/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:3877876/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:5946533/68‑1 (MQ=255) gcgcACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc > 1:37625861/1‑67 (MQ=255) gcACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt < 1:32983076/68‑1 (MQ=255) gcACTGTTCCGGCGGTGAGAAACGCCGGAAAACGTTTCAAACAGGCGGCTGCCGTAGCCGATGCCGc < 1:4621712/67‑1 (MQ=255) cACTGTTCCGGCGTTGTGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt > 1:11945935/1‑67 (MQ=255) cACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt > 1:29550314/1‑67 (MQ=255) cACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt > 1:12193858/1‑67 (MQ=255) cACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt > 1:12020506/1‑67 (MQ=255) acgttTTCCGGCGTTGAGAAACGCCGGAATACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt < 1:20918919‑M1/62‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:4930348/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:7313879/68‑1 (MQ=255) gTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt > 1:23454666/1‑68 (MQ=255) gTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt < 1:35796129/68‑1 (MQ=255) TCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACttt > 1:33127925‑M1/1‑68 (MQ=255) TCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACtt > 1:29445304‑M1/1‑67 (MQ=255) CCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtc > 1:27819316‑M1/1‑68 (MQ=255) CGGCGTTGAGACACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:29847445‑M1/1‑68 (MQ=255) CGGCGTTGAGAACGGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:33677638‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:10472964‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:27944910‑M1/1‑68 (MQ=255) GGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtctc < 1:34920237‑M1/68‑1 (MQ=255) GGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtctc < 1:8977733‑M1/68‑1 (MQ=255) CGTTGAGAAACGCCGGAAGACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:23818457‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:21268871‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg > 1:2212167‑M1/1‑67 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg > 1:25997719‑M1/1‑67 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:1152174‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:21774751‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:27174355‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:16253273‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:35003233‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:34541001‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:29013852‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:30092198‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:17851458‑M1/67‑1 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:19550025‑M1/1‑67 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:23200461‑M1/1‑67 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:819378‑M1/1‑67 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:8531603‑M1/1‑67 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:10798363‑M1/1‑67 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:35333675‑M1/1‑67 (MQ=255) gataaaCGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:9677947/65‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCTAACAGGATGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:15380670/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACCGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:27435124/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:12884712/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:1676234/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:3044258/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:19891107/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:5692851/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:20233478/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:5224321/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:25871062/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:37812659/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:37145387/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:36846304/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:26421040/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:32401808/68‑1 (MQ=255) gaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCa > 1:22817290/1‑68 (MQ=255) | ATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGC > CP009273/3734397‑3734526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |