| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3832491 = | 386 (0.810) | 25 (0.060) | 6/96 | NT | 7.8% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 260 (0.640) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
Only 100 of 815 total aligned reads displayed.
TTACCGGACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACC > CP009273/3832424‑3832558 | aCCGGACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCC > 1:145486‑M1/1‑68 (MQ=255) aCCGGACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCC > 1:12994448‑M1/1‑68 (MQ=255) tcgctaaagcggcagaaaccatttttaacggtggcgcggtgcctggctggtaattctcacttatGcc < 1:39307674‑M1/3‑1 (MQ=255) tcgctaaagcggcagaaaccatttttaacggtggcgcggtgcctggctggtaattctcacttatGcc < 1:32353640‑M1/3‑1 (MQ=255) tcgctaaagcggcagaaaccatttttaacggtggcgcggtgcctggctggtaattctcacttatGcc < 1:8292485‑M1/3‑1 (MQ=255) tcgctaaagcggcagaaaccatttttaacggtggcgcggtgcctggctggtaattctcacttatGcc < 1:33867055‑M1/3‑1 (MQ=255) ccGGACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCC > 1:30418969‑M1/1‑67 (MQ=255) ccGGACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCC > 1:7930976‑M1/1‑67 (MQ=255) ccGGACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCC > 1:21512729‑M1/1‑67 (MQ=255) cgctaaagcggcagaaaccatttttaacggtggcgcggtgcctggctggtaattctcacttatGcc > 1:27973719‑M1/64‑66 (MQ=255) ggACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGC > 1:23544522‑M1/1‑67 (MQ=255) ggACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGC > 1:37781221‑M1/1‑67 (MQ=255) ctaaagcggcagaaaccatttttaacggtggcgcggtgcctggctggtaattatcacttatGCcgcg < 1:4071942‑M1/6‑1 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:20531578‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:9637756‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:22092135‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:1992415‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:23973934‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:36313173‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:35129763‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:34054807‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:26930516‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:33713473‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:28580328‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:29236611‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:29877551‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:19633933‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:38906875‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:9258592‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:8560842‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:14336336‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:6516210‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:16017710‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCC > 1:16537350‑M1/1‑68 (MQ=255) aCTGGCTGGGAACGCTGCTGATTCAGTCATCGGTGATTGTGATTTCAATGGATTCCCGTCGACGCCCC > 1:19464678‑M1/1‑68 (MQ=255) ctggctggGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCa < 1:13308161/68‑1 (MQ=255) tggctggGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAg > 1:1369183/1‑68 (MQ=255) tggGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGaaa < 1:2639469/67‑1 (MQ=255) tggGAACGCTGCTGATTCCGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGaaa < 1:14944957/67‑1 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCTCGCCAGAAaaataa > 1:18762148/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:31913443/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:16993592/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:30910383/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:21810394/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:33473159/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:496917/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:22734324/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:25981573/1‑68 (MQ=255) aaCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataa > 1:36926479/1‑68 (MQ=255) aCGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAaaataaa > 1:35872068/1‑68 (MQ=255) tgctgATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGt < 1:25303718/68‑1 (MQ=255) gctgATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGt > 1:3061077/1‑67 (MQ=255) gcagATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCAAGAAAAATAAATCGt > 1:28848213/4‑67 (MQ=255) ttCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggc < 1:7250238‑M2/67‑4 (MQ=255) ttCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggc < 1:28297753‑M2/67‑4 (MQ=255) ttCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggc < 1:7543961‑M2/67‑4 (MQ=255) cTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggcgcg > 1:5854184‑M2/1‑62 (MQ=255) cTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggcgcg > 1:29008181‑M2/1‑62 (MQ=255) cTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggcgcg < 1:29527184‑M2/68‑7 (MQ=255) cTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggcgcg > 1:14194790‑M2/1‑62 (MQ=255) cTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggcgcg < 1:26729166‑M2/68‑7 (MQ=255) cTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCggcgcg > 1:12138057‑M2/1‑62 (MQ=255) tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa > 1:17309535/1‑68 (MQ=255) aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa > 1:32918159/1‑68 (MQ=255) tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa < 1:11506762/68‑1 (MQ=255) cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg > 1:11005405/1‑68 (MQ=255) cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg < 1:15144426/68‑1 (MQ=255) cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg < 1:11796624/68‑1 (MQ=255) ggTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGt < 1:10150332/68‑1 (MQ=255) gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGtt > 1:6263649/1‑67 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:38226372/68‑1 (MQ=255) ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt < 1:35600179/68‑1 (MQ=255) tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt > 1:37507698/1‑67 (MQ=255) tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt > 1:5247599/1‑67 (MQ=255) gctggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc < 1:38410022‑M1/49‑1 (MQ=255) ttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGGGAATTAcca > 1:24227576/1‑67 (MQ=255) ttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca > 1:3263549/1‑67 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:6998103/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:4691019/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:31162107/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:19282216/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:31677255/68‑1 (MQ=255) attctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccag < 1:34458013‑M1/55‑1 (MQ=255) ctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCa < 1:37242561‑M1/58‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:33207001/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc > 1:27147392/1‑68 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:6793325/68‑1 (MQ=255) cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc > 1:18557767/1‑68 (MQ=255) cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc < 1:10336153‑M1/62‑1 (MQ=255) ttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGGGTGAATTGCCAGCCCGGCACcgcg < 1:8911212‑M1/63‑1 (MQ=255) cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg > 1:20908963/1‑67 (MQ=255) tatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCgcgc < 1:24956826‑M1/64‑1 (MQ=255) tCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGcc > 1:34839353/1‑67 (MQ=255) cgccgcGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAc < 1:27564592/68‑1 (MQ=255) gccgcgccggacgatttatttttctggcgcggcgacgggaatccattgaaatcaaaatcaccgatgac > 1:24703956‑M1/1‑8 (MQ=255) gccgcgccggacgatttatttttctggcgcggcgacgggaatccattgaaatcaaaatcaccgatgac > 1:1574107‑M1/1‑8 (MQ=255) gccgcgccggacgatttatttttctggcgcggcgacgggaatccattgaaatcaaaatcaccgatgac > 1:5530221‑M1/1‑8 (MQ=255) gccgcgccggacgatttatttttctggcgcggcgacgggaatccattgaaatcaaaatcaccgatgac > 1:23129041‑M1/1‑8 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCCGCCAGGCACCGCGCCAcc < 1:17910584‑M1/68‑1 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc < 1:12721906‑M1/68‑1 (MQ=255) | TTACCGGACTGGCTGGGAACGCTGCTGATTCTGTCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACC > CP009273/3832424‑3832558 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |