New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3832491 =386 (0.810)25 (0.060) 6/96 NT 7.8% coding (884/924 nt) yicL EamA family inner membrane putative transporter
?CP009273 3832524 = 260 (0.640)coding (917/924 nt) yicL EamA family inner membrane putative transporter

Only 100 of 549 total aligned reads displayed.

TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC  >  CP009273/3832457‑3832591
                                                                   |                                                                   
tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa                                                                     >  1:23322125/1‑68 (MQ=255)
 cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt                                                                    >  1:31886306/1‑68 (MQ=255)
 cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt                                                                    >  1:35354426/1‑68 (MQ=255)
  aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa                                                                   <  1:24834728/68‑1 (MQ=255)
   tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa                                                                  <  1:27755604/68‑1 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 <  1:11796624/68‑1 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 <  1:18700366/68‑1 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 <  1:17120482/68‑1 (MQ=255)
     ggTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGt                                                                <  1:5053840/68‑1 (MQ=255)
      gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGtt                                                               >  1:6263649/1‑67 (MQ=255)
      gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg                                                               >  1:38742143/1‑68 (MQ=255)
      gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg                                                               >  1:31001671/1‑68 (MQ=255)
      gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg                                                               >  1:1497402/1‑68 (MQ=255)
        gattttgatttCAATGGATTCGCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:4825016/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:7211231/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:33673837/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:29322147/68‑1 (MQ=255)
         tgcctggctggtacttctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgag                                                             <  1:29829354‑M2/9‑1 (MQ=255)
         tgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgag                                                             <  1:33534801‑M2/9‑1 (MQ=255)
          ttttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGaa                                                           <  1:33279128/68‑1 (MQ=255)
             tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         >  1:34318997/1‑67 (MQ=255)
             tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         >  1:31680776/1‑67 (MQ=255)
             tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTa                                                        <  1:3074090/68‑1 (MQ=255)
               gctggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc                                                      <  1:38324419‑M1/49‑1 (MQ=255)
               atttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc                                                      >  1:5749739/1‑68 (MQ=255)
                tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     <  1:3047451/68‑1 (MQ=255)
                tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     <  1:14409974/68‑1 (MQ=255)
                 ttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGGGAATTAcca                                                     >  1:24227576/1‑67 (MQ=255)
                 tggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTTcca                                                     <  1:18193625‑M1/50‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:31162107/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:10216368/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:25039725/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:24027349/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:36770305/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:6720895/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:20224147/68‑1 (MQ=255)
                  ggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc                                                   <  1:28062476‑M2/19‑1 (MQ=255)
                     aattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccag                                                <  1:6545355‑M1/55‑1 (MQ=255)
                       ggATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGc                                              >  1:878029/1‑68 (MQ=255)
                       ggATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGc                                              <  1:15365621/68‑1 (MQ=255)
                         aTTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCa                                             <  1:23723664/67‑1 (MQ=255)
                         aTTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCa                                             <  1:11539312/67‑1 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:89126/68‑1 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:11182740/68‑1 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           >  1:19617184/1‑68 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:3698948/68‑1 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:6931258/68‑1 (MQ=255)
                             cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCCCcgc                                         <  1:2835385‑M1/62‑1 (MQ=255)
                             cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         <  1:10336153‑M1/62‑1 (MQ=255)
                              cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg                                        >  1:2090272/1‑67 (MQ=255)
                              cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg                                        >  1:17707128/1‑67 (MQ=255)
                                tCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGcc                                      >  1:541806/1‑67 (MQ=255)
                                gcgccgcGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGcc                                      >  1:27247704/2‑67 (MQ=255)
                                  GCCGCGCGAGAAAAATAAATCGGCCGGCGCGGCATAAGTGAGAATAACCAGCCAGGCACCGCGCCAcc                                   >  1:12929366‑M1/1‑68 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:33975166‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   >  1:28968213‑M1/1‑68 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:7855753‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   >  1:22650852‑M1/1‑68 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:12550177‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:16136481‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:27009726‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:26843047‑M1/68‑1 (MQ=255)
                                   CCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  <  1:3235485‑M1/68‑1 (MQ=255)
                                    CGCGCCAGAAAGATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:28377590‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:38407715‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:19255756‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:857332‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:26509096‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:32903147‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 <  1:3230788‑M1/68‑1 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 <  1:20673988‑M1/68‑1 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:30229688‑M1/1‑68 (MQ=255)
                                     GCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGtt                                >  1:25859902‑M1/1‑68 (MQ=255)
                                       GCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTa                               >  1:10089529‑M1/1‑67 (MQ=255)
                                             aaaaTAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTaaaaa                           <  1:37638098/65‑1 (MQ=255)
                                             aaaaTAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATgg                        >  1:9309580/1‑68 (MQ=255)
                                             aaaaTAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATgg                        >  1:39600069/1‑68 (MQ=255)
                                               aataaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt                      >  1:38151517/1‑68 (MQ=255)
                                                ataaatCGTCCGGCGCGGCCTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGttt                     <  1:28559798/68‑1 (MQ=255)
                                                 taaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt                      >  1:21072866/1‑66 (MQ=255)
                                                 taaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt                      >  1:19809984/1‑66 (MQ=255)
                                                  aaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt                      >  1:34799459/1‑65 (MQ=255)
                                                   aatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  <  1:17394205/68‑1 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:10898086/1‑67 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:37294845/1‑67 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:13829248/1‑67 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:7566264/1‑67 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGcc                >  1:20479771/1‑67 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGcc                >  1:35971881/1‑67 (MQ=255)
                                                       gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc              <  1:25559796/68‑1 (MQ=255)
                                                       gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc              <  1:14681428/68‑1 (MQ=255)
                                                       gTCCGGCGAGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc              <  1:35026395/68‑1 (MQ=255)
                                                         ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCtt            <  1:15771687/68‑1 (MQ=255)
                                                         ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCtt            >  1:13584261/1‑68 (MQ=255)
                                                         ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt             <  1:528699/67‑1 (MQ=255)
                                                                ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa      <  1:21997867‑M2/64‑1 (MQ=255)
                                                                ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa      <  1:39307674‑M2/64‑1 (MQ=255)
                                                                   aTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACtt   <  1:4560411/67‑1 (MQ=255)
                                                                   aTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTc  >  1:8314850/1‑68 (MQ=255)
                                                                   aTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTc  >  1:16893176/1‑68 (MQ=255)
                                                                   |                                                                   
TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC  >  CP009273/3832457‑3832591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.