| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4586926 = | NA (NA) | 8 (0.020) | 6/88 | NT | NA | noncoding (13/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4586955 = | NA (NA) | intergenic (+126/+12) | yjjN/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferases I and II | |||||
Only 100 of 701 total aligned reads displayed.
GCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAAT > CP009273/4586859‑4586993 | gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:22262608‑M1/68‑68 (MQ=255)gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:35225612‑M1/68‑68 (MQ=255)gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:15584293‑M1/68‑68 (MQ=255) cgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgt < 1:28671202‑M1/2‑1 (MQ=255) cgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgt < 1:12390612‑M1/2‑1 (MQ=255) gtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgt > 1:29299864‑M1/66‑67 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCgtg > 1:38750332/1‑68 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCg < 1:5233984/66‑1 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCg < 1:29995227/66‑1 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCg < 1:33096601/66‑1 (MQ=255) taagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgtgt < 1:2209174‑M1/4‑1 (MQ=255) taagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgtgt < 1:11126249‑M1/4‑1 (MQ=255) tCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCgtgt > 1:11750272/1‑68 (MQ=255) aagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgtgt > 1:3918375‑M1/64‑67 (MQ=255) agctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAg < 1:20750360‑M1/6‑1 (MQ=255) agctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAg < 1:12574416‑M1/6‑1 (MQ=255) gggAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAgg > 1:28234340/1‑67 (MQ=255) tcgggatcggcattggtgaaattaaagtggtagatcgtgaagggtaattcctgactgatGTGTAGGt > 1:7568385‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:15384148‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:38340840‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:13625300‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:7145353‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:26832798‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:25498581‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:8318899‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:19779981‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:20020457‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:21802329‑M1/60‑67 (MQ=255) ggAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGt < 1:31542516/67‑1 (MQ=255) ggAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGt < 1:26647695/67‑1 (MQ=255) ggAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGt < 1:10404354/67‑1 (MQ=255) ggAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGt < 1:10867822/67‑1 (MQ=255) gAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTc > 1:17964924/1‑67 (MQ=255) cgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTCg > 1:36034685‑M1/59‑68 (MQ=255) cgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTCg > 1:15015604‑M1/59‑68 (MQ=255) cgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTCg > 1:24989443‑M1/59‑68 (MQ=255) aGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGc > 1:27522335/1‑67 (MQ=255) aGTGTCGGGCGCTGTTTTTTTTGTTTCATAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCa < 1:672422/68‑1 (MQ=255) gtTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:24214024/67‑1 (MQ=255) gtTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAc > 1:31850215/1‑66 (MQ=255) gtTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAc > 1:31236411/1‑66 (MQ=255) gtTGGGCGCTGTTTTTTTTGTTTCTTAACAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:34886401/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:32834036/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:22584940/67‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa < 1:33744662/68‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa < 1:32318217/68‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa < 1:6413655/68‑1 (MQ=255) tGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa < 1:2789793/68‑1 (MQ=255) ggCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGAGTGTAGGTCGCACCCTAt > 1:36341053/1‑67 (MQ=255) gcgcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGc > 1:17065311/1‑68 (MQ=255) gcgcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGc > 1:4152629/1‑68 (MQ=255) gcgcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCCCACCCTATGc > 1:16105437/1‑68 (MQ=255) gcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:36588808/68‑1 (MQ=255) gcTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:26120252/68‑1 (MQ=255) tGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:37112457/67‑1 (MQ=255) tGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:14194072/67‑1 (MQ=255) tGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:13896850/67‑1 (MQ=255) ggtttttttGTTTCTTAATCATGTGTGGTAAGCCGTAGAAGGCGTGTAGGGCGCACCCTATGCGACCt < 1:30406774/66‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:33527325/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:35041678/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:39509217/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:9695449/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:1654255/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:30646734/68‑1 (MQ=255) gTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:16715619/68‑1 (MQ=255) tttttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTac < 1:38596315/68‑1 (MQ=255) ttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTAcaca > 1:4763495/1‑68 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:31008996/68‑1 (MQ=255) ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt < 1:8961617/67‑1 (MQ=255) taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGa < 1:11983971/68‑1 (MQ=255) taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGa < 1:3748974/68‑1 (MQ=255) taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGa < 1:37853222/68‑1 (MQ=255) tgtgTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGCCCTACACATCAGTCAGGAATTAc > 1:23433986/1‑67 (MQ=255) tgtgTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAcc < 1:7347226/68‑1 (MQ=255) gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagtc > 1:23079245/1‑57 (MQ=255) gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAccc < 1:18457650/68‑1 (MQ=255) gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTAc > 1:23824404/1‑66 (MQ=255) gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTAAGGAATTAc > 1:10016628/1‑66 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt > 1:29673191/1‑67 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt > 1:14516742/1‑67 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt > 1:2582787/1‑67 (MQ=255) tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc > 1:24520441/1‑67 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACg < 1:19555829/67‑1 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACg < 1:8585277/67‑1 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:38000901/1‑68 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:1895806/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:8020635/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:12971067/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:5579385/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTCCACGt > 1:28929740/1‑66 (MQ=255) aaGGCGTGTAGGTCGCACCCTTTGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCAcg > 1:21287191/1‑67 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:3455769/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:18033657/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGGTCTACCACt > 1:2032446/1‑68 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:19145967/67‑1 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:36836210/67‑1 (MQ=255) gCGTGTAGGTCGCACCCTATGCGACCTACACATCAGGAAGGAATTACCCTTCACGTTCTACCACTTTa > 1:6094670/1‑68 (MQ=255) cGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACttt < 1:35724508/66‑1 (MQ=255) GTGTAGGTCGCACCCTATGCGACCTACACCTCAGTCAGGAATTACCCTTCACGTTCTACCACTTTaa > 1:27101152‑M1/1‑67 (MQ=255) GTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTaa > 1:17516358‑M1/1‑67 (MQ=255) | GCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAAT > CP009273/4586859‑4586993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |