| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 521461 | NA (NA) | 5 (0.010) | 4/102 | NT | 100% | coding (2745/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 521483 | 0 (0.000) | coding (2767/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
GCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCC > CP009273/521413‑521499 | gcgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGC > 1:23728459‑M2/1‑68 (MQ=255) cgcACCTTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:5926913‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:34309700‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:24584885‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:29206916‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:22890192‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:21921012‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:15561354‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGAGGGAAACCGGCTGCg < 1:6841036‑M2/68‑2 (MQ=255) gcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:38318539‑M2/68‑1 (MQ=255) cACCCTCGCACCAGCCCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:19231719‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCCCCCCGTATGCCCCGGACCCGGCGGGCAACCGGCTGCCGG < 1:24990299‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCCCGGTCCCGGCGGTCAACCGGCTTCCGG < 1:17936369‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCCCGGACCCGGCGGGCAACCGGCTGCCG < 1:32268498‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGCCCCGGCGGGCAACCGGCTGCCGG < 1:11518990‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGTGCAACCGGCTGCCGG < 1:31407145‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:23780538‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:28743900‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:34331786‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:29216980‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:29556718‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:35205680‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:36966615‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:29986395‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:32517400‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:30692458‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:35670874‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:31995940‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:5950495‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:11181876‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:14329220‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:7632701‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:15395656‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:17956144‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:6666256‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:20002819‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:24351678‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:39203146‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:23172695‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:39199200‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:39598400‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:39517959‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:9989989‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:10978791‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:39149380‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:3843722‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:33644062‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:15478865‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:21495918‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:22719360‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:22077588‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAAACGGCTGCCG < 1:20238596‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTAAGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:24334806‑M2/68‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:8392400‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG > 1:1948080‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:31620846‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:35947508‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:4029082‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG > 1:38535131‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG > 1:23003861‑M2/1‑67 (MQ=255) aCCCTCGCACAAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:24094853‑M2/67‑1 (MQ=255) cccTCGCACCAGACCTGGGCATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:33478368‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:33328761‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:7565012‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCCGGCAACCGGCTGCCGtt < 1:1536480‑M2/67‑3 (MQ=255) aCCAGACCTGGACATCGCCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggc > 1:29621601‑M2/1‑59 (MQ=255) ccAGCCCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggca > 1:25286218‑M2/1‑58 (MQ=255) ccTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:15306990‑M2/51‑1 (MQ=255) ccTGGACATCCCCACCCCGAAGCCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggcatacg > 1:27521627‑M2/1‑53 (MQ=255) cTGGACACCCGCAGCCCGTATGCCACGGACCCGGCGGCCAACCGGCTGCCGGgtccgtggcatacggg > 1:34535309‑M2/1‑52 (MQ=255) cTGCACACCCCCACCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggcatacggg > 1:34583364‑M2/1‑52 (MQ=255) | GCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCC > CP009273/521413‑521499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |