| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 728221 = | 0 (0.000) | 4 (0.010) | 4/104 | NT | 100% | coding (3183/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 730160 = | NA (NA) | pseudogene (572/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
ACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGCG > CP009273/728154‑728288 | atttcactttccagccggtcgagcatctgcgccagcaccggcgggaacacgacactgccaccgtcttc < 1:26805266‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaaccccacactgccaccgtcttc < 1:28487623‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccgccgtcttc < 1:9911316‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:7097993‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:1999022‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:4635381‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:39366978‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:38197854‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:21622026‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:21771491‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:2647357‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:27191723‑M1/1‑1 (MQ=255)atttcactttccagccggtcgagcatcagcaccagcaccggcgggaacaccacactgccaccgtattc < 1:19866829‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgcccccgtcttc < 1:25883683‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:27499282‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:29340468‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:24851289‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:22269969‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:35302989‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:3661037‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:20914948‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:6236634‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:27886358‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttc < 1:12771873‑M1/1‑1 (MQ=255) tttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCg > 1:21240755‑M1/67‑68 (MQ=255) tttcactttccagccggtcgagcatctgcacaagcaccggcgggaacaccacactgccaccgtcttc < 1:33453059‑M1/1‑1 (MQ=255) actttccagccggtcgagcatctgcaccagcaccggcgggaaccccaccctgccaccgtcttCGCCa < 1:542816‑M1/5‑1 (MQ=255) actttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCa < 1:30592735‑M1/5‑1 (MQ=255) actttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCa < 1:6602208‑M1/5‑1 (MQ=255) ctttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCAcc < 1:6732610‑M1/7‑1 (MQ=255) tttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCACCg < 1:15300988‑M1/8‑1 (MQ=255) tttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCACCg < 1:31602415‑M1/8‑1 (MQ=255) ttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCACCgg > 1:14452181‑M1/60‑68 (MQ=255) ttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCACCgg > 1:13719910‑M1/60‑68 (MQ=255) ttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCACCgg > 1:15977803‑M1/60‑68 (MQ=255) ttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCACCgg > 1:21301558‑M1/60‑68 (MQ=255) ttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttCGCCACCgg > 1:9051915‑M1/60‑68 (MQ=255) accggcgggaacaccacactgccaccgtcttCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGc > 1:21477341‑M1/32‑68 (MQ=255) actgccaccgtcttCGCCACCGGTGAGCTGGCGAACACGCAGCGCCGCAGCCTGGCGGAGACCCTtcc < 1:27475643‑M1/54‑2 (MQ=255) gccaccgtcttCGCCACCGGTGAGCTGGCGATAACGCAGCGCCGCAGCCTGGCGGATACCCTTcagca < 1:28593442‑M1/57‑1 (MQ=255) cgtcttCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCg < 1:53135‑M1/62‑1 (MQ=255) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGt < 1:19133406/67‑1 (MQ=31) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGt < 1:8622221/67‑1 (MQ=31) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:13567013/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:5071187/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:36292548/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:35730163/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:10944470/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:8813596/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:10404226/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:30206037/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:20301844/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:1449231/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:28849788/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:2554480/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:15852860/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:22677540/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:28127956/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:15804066/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:17872366/1‑68 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCCGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:28001527/1‑67 (MQ=18) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:34553719/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:38970606/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:38106228/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:463609/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:32826727/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:31346936/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:30717663/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:28179618/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:1881878/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:20375300/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:5050973/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:12723943/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:39142396/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:7795049/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:7934241/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:18568582/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:4001496/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:38863988/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:27851545/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:10023590/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:31425290/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTg > 1:30139406/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCCGGCGGATACCCTTCAGCAGTCCGGTgg < 1:11010636/68‑1 (MQ=25) aCCGCCACCGGTGAGCTGGCGAAAACGCAGAGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:16551380/68‑1 (MQ=25) aCCGCCACAGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTgg < 1:17487262/68‑1 (MQ=25) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGc > 1:4377370/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGc > 1:26337423/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGc > 1:37041160/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGc > 1:1775247/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGc > 1:27531559/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGc > 1:21731153/1‑68 (MQ=35) CGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGCg > 1:14714401‑M1/1‑68 (MQ=255) | ACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGTGGCG > CP009273/728154‑728288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |