| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 728221 = | 0 (0.000) | 4 (0.010) | 4/104 | NT | 100% | coding (3183/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 730160 = | NA (NA) | pseudogene (572/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
Only 100 of 240 total aligned reads displayed.
GCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGC > CP009273/730093‑730204 | ccACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGaa > 1:14130263/1‑68 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAg > 1:22565406/1‑67 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:39183862/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:30971130/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:28206675/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:39015110/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:17325331/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:12205544/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:36685705/66‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:10201213/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:31505588/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg > 1:34668344/1‑68 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:35675112/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:15218078/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:5258397/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:20395757/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg > 1:18370200/1‑68 (MQ=35) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGATGACGGt < 1:24978109/67‑1 (MQ=25) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGt < 1:21956197/67‑1 (MQ=35) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGt < 1:32352140/67‑1 (MQ=35) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGt < 1:26622607/67‑1 (MQ=35) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGt < 1:25924395/67‑1 (MQ=35) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGt < 1:18108929/67‑1 (MQ=35) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGt < 1:13373759/67‑1 (MQ=35) tGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACAGTg > 1:24046875/1‑68 (MQ=25) gAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTg < 1:29610477/67‑1 (MQ=35) aGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGc > 1:25472532/1‑68 (MQ=35) aGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGc > 1:35745345/1‑68 (MQ=35) tcTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGc < 1:5845868/66‑1 (MQ=25) gCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCGGTCCGGCGGCGAAGCCGGTg > 1:12406189/1‑65 (MQ=255) gCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGc < 1:7861395/67‑1 (MQ=35) gCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGc < 1:9471167/67‑1 (MQ=35) gCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGc < 1:11976031/67‑1 (MQ=35) gCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCa > 1:27738636/1‑68 (MQ=35) cTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAg > 1:8166325/1‑68 (MQ=35) tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgt < 1:26297859/68‑1 (MQ=35) tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgt > 1:5028023/1‑68 (MQ=35) tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgt < 1:4546636/68‑1 (MQ=35) tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgt > 1:12825100/1‑68 (MQ=35) tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgt < 1:23221092/68‑1 (MQ=35) tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAg < 1:24811442/67‑1 (MQ=35) tGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAg < 1:427144/67‑1 (MQ=35) cGAAAACGCAGCGCCGCAGCGTGGCGGTTACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgtgt < 1:36238776/67‑1 (MQ=255) cGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgtgt < 1:36607984/67‑1 (MQ=35) cGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgtgt < 1:18718733/67‑1 (MQ=35) cGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgtgt < 1:17708829/67‑1 (MQ=35) cGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgtgt < 1:37836385/67‑1 (MQ=35) cGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgtgt < 1:23488002/67‑1 (MQ=35) cGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAgtgt < 1:28192812/67‑1 (MQ=35) cGAAAACGCACCGCCGCAGCCTGGCGGTTACCCTTCAGCAGTCCGGCGGCGGAGCCGGGGGCAGtgtg > 1:14749060/1‑68 (MQ=11) aaaaCGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTgtggt > 1:30246042/1‑68 (MQ=35) aaaaCGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTgtggt > 1:15636421/1‑68 (MQ=35) aaaaCGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTgtggt > 1:16942091/1‑68 (MQ=35) aaaCGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTgtggtg < 1:19261357/68‑1 (MQ=35) aaaCGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTgtggt < 1:7392998/67‑1 (MQ=35) aaCGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGgtgt < 1:5574152/68‑1 (MQ=35) aCGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGgtgt > 1:3603482/1‑67 (MQ=35) cGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGtt > 1:32674548/1‑67 (MQ=35) cGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGtt > 1:9664963/1‑67 (MQ=35) gCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTc > 1:30493300/1‑67 (MQ=35) gCAGCGCCGCAGCCTGGCGGATACCCATCAGCAGTCCGGCGTCGAAGACGGGGGCAGTGTGGTGTTc > 1:20052072/1‑67 (MQ=11) aGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTccc < 1:6671886/67‑1 (MQ=35) gcggcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccg < 1:15333003/62‑1 (MQ=25) gccgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgccg > 1:5479253/1‑68 (MQ=35) gccgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccg < 1:8467630/65‑1 (MQ=35) ccgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCgg > 1:27519712/1‑68 (MQ=35) cgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt < 1:28823223/68‑1 (MQ=35) cgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt < 1:6169760/68‑1 (MQ=35) cgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt < 1:16472854/68‑1 (MQ=35) cgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt < 1:17214695/68‑1 (MQ=35) cgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt < 1:25277935/68‑1 (MQ=35) cgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt < 1:24548474/68‑1 (MQ=35) cgcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt < 1:2429918/68‑1 (MQ=35) gcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTg < 1:37510849/68‑1 (MQ=35) gcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTg < 1:14425244/68‑1 (MQ=35) gcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTg < 1:29244839/68‑1 (MQ=35) gcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTg < 1:11031017/68‑1 (MQ=35) gcAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTg < 1:34325443/68‑1 (MQ=35) aGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGt > 1:13280844/1‑65 (MQ=35) gCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGGGGTGTTCCCGCCGGTGCTg > 1:8152390/1‑68 (MQ=25) cTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTgg < 1:21055291/67‑1 (MQ=35) cTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTgg < 1:2226058/67‑1 (MQ=35) cTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTgg < 1:28757319/67‑1 (MQ=35) cTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTgg < 1:32236104/67‑1 (MQ=35) cTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTg < 1:39512143/66‑1 (MQ=35) cTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTg < 1:33493829/66‑1 (MQ=35) cTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGt < 1:26711059/68‑1 (MQ=35) ggCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGc > 1:38245507/1‑68 (MQ=35) cGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTTGTGCa < 1:19765135/67‑1 (MQ=25) cGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAg > 1:5367377/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:20541567/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:12457573/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:7310409/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:6350537/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:18224166/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:20641118/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:35976546/1‑68 (MQ=35) ggATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGa > 1:33910766/1‑68 (MQ=35) aTACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGAt < 1:10723304/67‑1 (MQ=35) aCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGc > 1:20945445/1‑67 (MQ=31) | GCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGC > CP009273/730093‑730204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |