| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1240767 = | 351 (0.740) | 30 (0.070) | 16/96 | NT | 8.2% | coding (152/441 nt) | ycgY | uncharacterized protein |
| ? | CP009273 | = 1302830 | 374 (0.920) | coding (73/1461 nt) | clsA | cardiolipin synthase 1 | |||||
Only 100 of 540 total aligned reads displayed.
ATTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGATTAT > CP009273/1240700‑1240834 | aTTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCa < 1:25631581/68‑1 (MQ=255) tGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt > 1:17621525/1‑68 (MQ=255) tGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt > 1:34701884/1‑68 (MQ=255) atgtaaataatcgacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:20303449‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaa > 1:17326519‑M1/66‑66 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:10255671‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:25244739‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:19854368‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:33266664‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:6008859‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:11771393‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGt < 1:21033414‑M1/3‑1 (MQ=255) aaCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCTGCAATGCTTCAGtt > 1:30470733/1‑67 (MQ=255) aaCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGtt > 1:729659/1‑67 (MQ=255) aCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTAc > 1:20640355/1‑68 (MQ=255) cATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTAc > 1:13724094/1‑67 (MQ=255) cATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTAc > 1:1834102/1‑67 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:4625450‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:22899716‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:22443475‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:26549931‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:28905539‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:31828078‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:36278187‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:36913305‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:37487751‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:4353348‑M1/62‑68 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGtt < 1:34238930‑M1/4‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:8368285‑M1/7‑1 (MQ=255) aataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:25975169‑M1/7‑1 (MQ=255) taatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:13355453‑M1/7‑1 (MQ=255) gAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAaga > 1:6844544/1‑68 (MQ=255) aaTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAagag > 1:12690215/1‑68 (MQ=255) aaTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAagag > 1:8545960/1‑68 (MQ=255) aacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTACGCGAAGAgg > 1:21940503‑M1/54‑68 (MQ=255) aTTGATCATTCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg < 1:33720457/68‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:27586468/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:5263494/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:9547754/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:1782781/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:23067452/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:12322384/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg < 1:14807711/68‑1 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg > 1:21404272/1‑68 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg < 1:27294312/68‑1 (MQ=255) aaTCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTc < 1:16686849/68‑1 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:10049523/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:15359241/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa < 1:36753843/68‑1 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:38634987/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:7786822/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:10874409/1‑68 (MQ=255) cTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGaa < 1:22693335/53‑1 (MQ=255) tGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCt > 1:1315703/1‑68 (MQ=255) tGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCt > 1:16190221/1‑68 (MQ=255) ggCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGGCTGAATTCtt < 1:32253802/68‑1 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:4777192/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:24323813/1‑68 (MQ=255) tAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTgg > 1:12892017/1‑68 (MQ=255) gcgcgtcgtttcattagaattcgtaaATTTACGCGTAGAGGAATGGTATGAATTCTTTTTTTGGTTGc > 1:8823483‑M1/27‑68 (MQ=255) ccAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGtt > 1:19018854/1‑66 (MQ=255) cAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGc < 1:21706721/67‑1 (MQ=255) cAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGc < 1:14419675/67‑1 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt < 1:8949023/68‑1 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt < 1:23359249/68‑1 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt < 1:5617121/68‑1 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt > 1:29395134/1‑68 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt < 1:4863014/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt > 1:35492909/1‑66 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:8053499/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:37816570/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:33407459/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:29778660/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGGCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:632681/68‑1 (MQ=255) ccGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtctc < 1:30191665/68‑1 (MQ=255) ccGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc > 1:39178822/1‑66 (MQ=255) cGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAtta > 1:14055693/1‑64 (MQ=255) cGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc > 1:9227196/1‑65 (MQ=255) ttCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTTGTTGCTAAATTCTCTgg > 1:31328829/1‑68 (MQ=255) ggCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgt < 1:39418722/68‑1 (MQ=255) ggCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgt < 1:32551791/68‑1 (MQ=255) ggCAATGCTTCAGTTACGCGAAGAGGAATGGGCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgt < 1:22214912/68‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:35920814/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTC‑TTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:12112118/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGGCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:15876948/67‑1 (MQ=255) aatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:23776529‑M1/58‑1 (MQ=255) atgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt > 1:38067725‑M1/9‑67 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:28394282/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:11170664/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:19908084/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:30974643/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg > 1:5567918/1‑66 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg > 1:35194045/1‑66 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg > 1:32954787/1‑66 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGCCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg > 1:28051341/1‑66 (MQ=255) tGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGATGCTAAATTCTCTGGAGTGTCTg < 1:24866585/68‑1 (MQ=255) gCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTgg < 1:2698751/68‑1 (MQ=255) gtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTgg > 1:26276582‑M1/5‑67 (MQ=255) gtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTgg > 1:2956413‑M1/5‑67 (MQ=255) ttCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGa < 1:10404812/67‑1 (MQ=255) | ATTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGATTAT > CP009273/1240700‑1240834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |