New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1240767 =351 (0.740)30 (0.070) 16/96 NT 8.2% coding (152/441 nt) ycgY uncharacterized protein
?CP009273 = 1302830 374 (0.920)coding (73/1461 nt) clsA cardiolipin synthase 1

Only 100 of 560 total aligned reads displayed.

AGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGTT  >  CP009273/1302763‑1302897
                                                                   |                                                                   
aGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTaa                                                                     >  1:8312380/1‑68 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGGGTCGTTTCATTAGAATGCGTAAagt                                                                  >  1:23630019‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:6008859‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:24785116‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:449565‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:25244739‑M2/1‑65 (MQ=255)
   aTGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAag                                                                   >  1:28006828‑M2/1‑65 (MQ=255)
       aaaTAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              >  1:21733526‑M2/1‑61 (MQ=255)
       aaaTAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              >  1:22398070‑M2/1‑61 (MQ=255)
       aaaTAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              >  1:36278187‑M2/1‑61 (MQ=255)
       aaaTAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              >  1:13222912‑M2/1‑61 (MQ=255)
        aataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              <  1:21198190‑M2/67‑8 (MQ=255)
        aataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              <  1:31667242‑M2/67‑8 (MQ=255)
         ataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacg                                                              <  1:16190479‑M2/66‑8 (MQ=255)
         ataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGcc                                                            <  1:18997615/68‑1 (MQ=255)
         ataatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGcc                                                            <  1:472105/68‑1 (MQ=255)
          taatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcga                                                           <  1:13864461‑M2/68‑11 (MQ=255)
          taatCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCt                                                           <  1:23081076/68‑1 (MQ=255)
            atCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGc                                                         <  1:16724605/68‑1 (MQ=255)
            atCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGc                                                         >  1:37403255/1‑68 (MQ=255)
                aCAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATg                                                     <  1:13609862/68‑1 (MQ=255)
                aCAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATg                                                     >  1:20474710/1‑68 (MQ=255)
                   gCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGc                                                  >  1:14306087/1‑68 (MQ=255)
                    ccAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCa                                                 >  1:2861011/1‑68 (MQ=255)
                     cAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAg                                                   <  1:29848882/65‑1 (MQ=255)
                     cAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAg                                                   <  1:28719277/65‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTGGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:11179194/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:35180225/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:7836155/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:18457660/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:30864152/67‑1 (MQ=255)
                         ccATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAg                                            >  1:637475/1‑68 (MQ=255)
                         ccATCCCGGAGGGAACTGCGCGTCGTTTCATTAGAATCCGTAAAGTTACGCCTGCAATGAGCAACCa                                             <  1:10656124/67‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           >  1:31899504/1‑68 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:32798962/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           >  1:6964950/1‑68 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:33306660/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:34529494/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           >  1:14627638/1‑68 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:12649630/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:18088129/68‑1 (MQ=255)
                          cATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGt                                           <  1:4280099/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:32207263/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:25996468/68‑1 (MQ=255)
                            tCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTAt                                         <  1:5083471/68‑1 (MQ=255)
                             cgcgGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATc                                        <  1:22194016/68‑1 (MQ=255)
                             cgcgGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATc                                        <  1:19269311/68‑1 (MQ=255)
                             cgcgGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATc                                        <  1:22746794/68‑1 (MQ=255)
                              gcgGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATc                                        >  1:11502163/1‑67 (MQ=255)
                               cgGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATccc                                      >  1:27299200/1‑68 (MQ=255)
                                  aGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAagttacgcgaagaggaatggtctgaattcttttt                                   <  1:1292506‑M2/68‑35 (MQ=255)
                                   gggAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGaa                                  >  1:17006516/1‑68 (MQ=255)
                                      aaCTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATg                                <  1:23827712/67‑1 (MQ=255)
                                        cTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGcc                             >  1:28390363/1‑68 (MQ=255)
                                        cTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGcc                             <  1:19759730/68‑1 (MQ=255)
                                          gcgcGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGcca                            >  1:11961246/1‑67 (MQ=255)
                                          gcgcGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGcca                            >  1:24352802/1‑67 (MQ=255)
                                          gcgcGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGcca                            >  1:20860986/1‑67 (MQ=255)
                                            gcgTCGTTTCATTAGAATGCGTAAagttacgcgaagaggaatggtctgaattctttttttggttgcta                         <  1:9291210‑M2/68‑45 (MQ=255)
                                            gcgTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacc                         >  1:26548624/1‑68 (MQ=255)
                                            gcgTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacc                         <  1:29687124/68‑1 (MQ=255)
                                            gcgTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacc                         >  1:37884735/1‑68 (MQ=255)
                                              gtcgtTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacca                        <  1:7688313/67‑1 (MQ=255)
                                              gtcgtTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacca                        <  1:15732026/67‑1 (MQ=255)
                                              gtcgtTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGccaacca                        <  1:36989748/67‑1 (MQ=255)
                                                cgtTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCcaaccaac                      <  1:38485318/67‑1 (MQ=255)
                                                cgtTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACt                     <  1:1680734/68‑1 (MQ=255)
                                                 gtTTCATTAGAATGCGTAAagttacgcgaagaggaatggtctgaattctttttttggttgctaaattc                    >  1:8495169‑M2/1‑19 (MQ=255)
                                                   ttCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCa                   <  1:39269161/67‑1 (MQ=255)
                                                   ttCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCa                   <  1:25717572/67‑1 (MQ=255)
                                                      aTTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCa                >  1:15363676/1‑67 (MQ=255)
                                                      aTTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCa                >  1:7329116/1‑67 (MQ=255)
                                                       ttAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAAc              <  1:34042670/68‑1 (MQ=255)
                                                        tAGACTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:6655792/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:1989127/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:1760494/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:36787297/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:27744372/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:29133063/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:30015275/68‑1 (MQ=255)
                                                        tAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACg             <  1:27026432/68‑1 (MQ=255)
                                                         aGAATGCGTAAagttacgcgaagaggaatggtctgaattctttttttggttgctaaattctctggagt            <  1:33611726‑M2/68‑58 (MQ=255)
                                                         aGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGt            >  1:4927480/1‑68 (MQ=255)
                                                         aGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGt            >  1:20295269/1‑68 (MQ=255)
                                                         aGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGt            >  1:15136468/1‑68 (MQ=255)
                                                           aaTGCGTAAAGTTACTCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtat          >  1:5453653/1‑68 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAGCCAACTCACCAACGtat          >  1:3950312/1‑68 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtat          >  1:7503232/1‑68 (MQ=255)
                                                           aaTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtat          >  1:10055819/1‑68 (MQ=255)
                                                            aTGCGTAAagttacgcgaagaggaatggtctgaattctttttttggttgctaaattctctggagtgt          >  1:31059479‑M2/1‑8 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGtata         >  1:10955689/1‑68 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:11659604/66‑1 (MQ=255)
                                                            aTGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGta           <  1:38086956/66‑1 (MQ=255)
                                                             tGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATaa        >  1:1229911/1‑68 (MQ=255)
                                                                ttAAAGTTACGCCTGCTATGAGCAACCAGTATACCAGAATGGCCAACGAACTCACCAACGTATAAACg     <  1:35905395/67‑1 (MQ=255)
                                                                gTAAagttacgcgaagaggaatggtctgaattctttttttggttgctaaattctctggagtgtctgg      >  1:26276582‑M2/1‑4 (MQ=255)
                                                                  aaaGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACgg    <  1:35652192/67‑1 (MQ=255)
                                                                  aaaGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGt   <  1:34932611/68‑1 (MQ=255)
                                                                   aaGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGtt  <  1:3041058/68‑1 (MQ=255)
                                                                   aaGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGtt  <  1:9062879/68‑1 (MQ=255)
                                                                   |                                                                   
AGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGCGTCGTTTCATTAGAATGCGTAAAGTTACGCCTGCAATGAGCAACCAGTATCCCAGAATGGCCAACCAACTCACCAACGTATAAACGGTT  >  CP009273/1302763‑1302897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.