| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1985565 = | 327 (0.690) | 14 (0.030) | 9/96 | NT | 5.8% | noncoding (34/76 nt) | glyW | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 177 (0.430) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 445 total aligned reads displayed.
CGCTTGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGATTTTA > CP009273/1985498‑1985632 | cGCTTGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGc > 1:3245768/1‑68 (MQ=255)cGCTTGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGc < 1:18214867/68‑1 (MQ=255) gCTTGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCa > 1:17353699/1‑68 (MQ=255) ttGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAg > 1:6460331/1‑68 (MQ=255) tGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAgg < 1:27618171/68‑1 (MQ=255) tGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAgg < 1:11818538/68‑1 (MQ=255) tGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGCCAAgg < 1:22703464/68‑1 (MQ=255) aaagtgctgcaaagcacagaccacccacgcgggaatagctcagttggtagagcacgaccttgcCAAgg > 1:665773‑M1/64‑68 (MQ=255) aaagtgctgcaaagcacagaccacccaagcgggaatagctcagttggtagagcacgaccttgcCAAgg > 1:26085779‑M1/64‑68 (MQ=255) aaagtgctgcaaagcacagaccacccaagcgggaatagctcagttggtagagcacgaccttgcCAAgg > 1:35810752‑M1/64‑68 (MQ=255) aaagtgctgcaaagaacagaccacccaagcgggaatagctcagttggtagagcacgaccttgcCAAgg > 1:18869929‑M1/64‑68 (MQ=255) gACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGt < 1:17645537/68‑1 (MQ=255) gACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGt < 1:2536275/68‑1 (MQ=255) gACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGt < 1:38897879/68‑1 (MQ=255) gcggATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGt > 1:28508339/4‑68 (MQ=255) gCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGt < 1:8402324/68‑1 (MQ=255) gCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGt > 1:25182053/1‑68 (MQ=255) gCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGt < 1:15560495/68‑1 (MQ=255) gCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGt < 1:25016560/68‑1 (MQ=255) gCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGt < 1:29074153/68‑1 (MQ=255) gCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGt < 1:592175/68‑1 (MQ=255) gctgcaaagcacagaccacccaagcgggaatagctcagttggtagagcacgaccttgcCAAGGTCGt > 1:10757403‑M1/59‑67 (MQ=255) cGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTg < 1:29891429/67‑1 (MQ=255) cGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGc < 1:22327362/68‑1 (MQ=255) tGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGctct > 1:29558373/1‑68 (MQ=255) tGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGctc < 1:11352429/67‑1 (MQ=255) tGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGctc < 1:26792169/67‑1 (MQ=255) tGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGctc < 1:2655415/67‑1 (MQ=255) gTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTa < 1:23573220/68‑1 (MQ=255) gTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTa < 1:38019771/68‑1 (MQ=255) gTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTa < 1:31436822/68‑1 (MQ=255) acagcacagaccacccacgcgggaatagctcagttggtagagcacgaccttgcCAAGGTCGTGCTCTa > 1:1724231‑M1/54‑68 (MQ=255) aaagcacagaccacccacgcgggaatagctcagttggtagagcacgaccttgcCAAGGTCGTGCTCTa > 1:16424115‑M1/54‑68 (MQ=255) aaagcacagaccacccacgcggcaatagctcagttggtagagcacgaccttgcCAAGGTCGTGCTCTa > 1:2721818‑M1/54‑68 (MQ=255) aaagcacagaccacccaagcgggaatagctcagttggtagagcacgaccttgcCAAGGTCGTGCTCTa > 1:36066199‑M1/54‑68 (MQ=255) tCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTa < 1:12410888/67‑1 (MQ=255) ttttAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCa < 1:33128333/68‑1 (MQ=255) ttttAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCa < 1:15697396/68‑1 (MQ=255) ttttAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCa < 1:34783599/68‑1 (MQ=255) ttttAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCa < 1:39030651/68‑1 (MQ=255) ttttAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCa < 1:4902422/68‑1 (MQ=255) ttttAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCa < 1:21339151/68‑1 (MQ=255) ttttAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCa < 1:20927540/68‑1 (MQ=255) acagaccacccaagcgggaatagctcagttggtagagcacgaccttgcCAAgg < 1:24908661‑M1/5‑1 (MQ=255) aaCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa < 1:2973515/68‑1 (MQ=35) aaCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa < 1:10191868/68‑1 (MQ=35) aaCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa < 1:8145794/68‑1 (MQ=35) aaCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa < 1:3872881/68‑1 (MQ=35) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTgc > 1:34294837/1‑66 (MQ=18) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa > 1:2577589/1‑67 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa > 1:2391627/1‑67 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa > 1:16772137/1‑67 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa > 1:20636292/1‑67 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa > 1:20425952/1‑67 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa > 1:19964012/1‑67 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGa > 1:3036493/1‑67 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAg < 1:1591529/68‑1 (MQ=33) aCTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACAAACTGa > 1:35198650/1‑67 (MQ=18) cTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGc < 1:18529631/68‑1 (MQ=31) aCGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAtt < 1:39206924/68‑1 (MQ=35) aCGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAtt < 1:14679822/68‑1 (MQ=35) aCGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAtt < 1:6123445/68‑1 (MQ=35) aCGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAtt < 1:30815032/68‑1 (MQ=35) aCGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAt > 1:19639124/1‑67 (MQ=33) cGAGACTCGAACTCGCGACCCCGACCTTGGCTAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATtc < 1:36571488/68‑1 (MQ=255) cGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATtc < 1:19135338/68‑1 (MQ=37) atagctcagttggtagagcacgaccttggCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATtca < 1:33394313‑M1/39‑1 (MQ=255) agaCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCCACTGAGCTATTCCCGCATtcc > 1:5329818/1‑66 (MQ=255) agaCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATtca > 1:24267492/1‑67 (MQ=39) cTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATtcatca < 1:8620462/67‑1 (MQ=255) tcagttggtagagcacgaccttggGAAGGTCGTGCTGTACCAACTGAGCTATTCCCGCATTCATCaa < 1:17100428‑M1/43‑1 (MQ=255) tCGAAGTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCAGCATTCATCaa > 1:28359759/1‑67 (MQ=255) cGAACTCGCGACCCCGACCTTGGCAAGGTAGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGc > 1:11176752/1‑68 (MQ=255) aCTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCaa > 1:29180452/1‑67 (MQ=255) aCTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACAAAATGAGCGATTCCCGCATTCATCAAGCaa > 1:3013381/1‑67 (MQ=17) tCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCa < 1:32268939/68‑1 (MQ=255) tCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCa > 1:3130229/1‑68 (MQ=255) tCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCa < 1:9166949/68‑1 (MQ=255) tCGCGACCCCGACCTTGGCAAGGGCGTGCGCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCa < 1:27832139/68‑1 (MQ=255) gcgACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGt < 1:21770191/68‑1 (MQ=255) gcgACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGt < 1:6987212/68‑1 (MQ=255) gcgACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGt < 1:10027415/68‑1 (MQ=255) gACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGtt < 1:13116957/67‑1 (MQ=255) gACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGtt < 1:13492115/67‑1 (MQ=255) ccGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATc > 1:38285722/1‑67 (MQ=255) ccGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCa < 1:24720950/68‑1 (MQ=255) acGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATc > 1:10409943/2‑67 (MQ=255) gACCTTGGCAAGGGCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACt < 1:15157700/68‑1 (MQ=255) ccTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTg > 1:13901968/1‑68 (MQ=255) ccTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTg > 1:14250887/1‑68 (MQ=255) ccTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTg > 1:24556984/1‑68 (MQ=255) cTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCa < 1:3454977/55‑1 (MQ=255) cTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGa > 1:9388605/1‑68 (MQ=255) ttGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGAt < 1:12780990/68‑1 (MQ=255) ttGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGAt < 1:7302208/68‑1 (MQ=255) tGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGAtt < 1:33781347/68‑1 (MQ=255) CAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGAtttt > 1:37226632‑M1/1‑67 (MQ=255) CAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGAtttt > 1:30558537‑M1/1‑67 (MQ=255) CAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGATTtta < 1:4366900‑M1/68‑1 (MQ=255) CAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGATTtta < 1:10299439‑M1/68‑1 (MQ=255) | CGCTTGACGCCGATGTCTTTTAAACTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCATTCATCAAGCAATCAGTTAATCACTTGATTTTA > CP009273/1985498‑1985632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |