New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3263325NA (NA)111 (0.320)
+TTCGGCGGGTTTTTA		 7/82 NT 27.6% intergenic (+364/+250) yhaC/rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component
?CP009273 = 3263427 397 (0.840)intergenic (+466/+148) yhaC/rnpB pentapetide repeats‑related protein/RNase P, M1 RNA component

Only 100 of 647 total aligned reads displayed.

TCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGT  >  CP009273/3263262‑3263391
                                                               |                                                                  
        gTATAGTGTCGTGGACAGTGATTAATATTTCAGCACCTCCAAAAGTAAAAAACCGCCGAAGCGGGttt                                                        >  1:27035093/1‑68 (MQ=11)
             gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg                                                   >  1:25756716/1‑68 (MQ=35)
             gtgtCGTGGACAGTCATTCATCATTATGACCCTACAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg                                                   >  1:9686032/1‑68 (MQ=11)
               gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa                                                 >  1:9810872/1‑68 (MQ=35)
               gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa                                                 <  1:3786955/68‑1 (MQ=35)
               gtCGTGGACAGTCATTCATCTTTCTGCCCCTACCAAAGTAAAAACCCGCCGAATCGGGGTTTTACGTa                                                 >  1:24603686/1‑68 (MQ=11)
                 cGTGGTCAGTCATTCATCTTTCTGCCCCGCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAAGTaaa                                               >  1:12741679/1‑68 (MQ=11)
                 cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa                                               <  1:34397893/68‑1 (MQ=35)
                 cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa                                               <  1:23965201/68‑1 (MQ=35)
                   tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAAc                                             >  1:10318745/1‑68 (MQ=39)
                    ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa                                            >  1:26041063/1‑68 (MQ=40)
                      aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg                                          >  1:8814948/1‑68 (MQ=40)
                      aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg                                          >  1:5047916/1‑68 (MQ=40)
                      aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg                                           <  1:38804335/67‑1 (MQ=40)
                      aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg                                          >  1:20970552/1‑68 (MQ=25)
                      aCAGTCATTCATCTTTCTGCCCATCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg                                          >  1:22103747/1‑68 (MQ=255)
                           cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg                                          <  1:2297054/63‑1 (MQ=255)
                           cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGt                                         <  1:20199718/64‑1 (MQ=40)
                               catCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 <  1:37974214/68‑1 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:23696857/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:5165978/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:35338814/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:34612079/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:31986018/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:408139/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:39138614/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:10117478/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAc                                >  1:13133943/1‑68 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAATGa                                 >  1:2222366/1‑67 (MQ=255)
                                atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                 >  1:14454230/1‑67 (MQ=255)
                                atCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAc                                >  1:18297256/1‑68 (MQ=255)
                                 tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc                               <  1:9105940/68‑1 (MQ=255)
                                 tCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc                               >  1:20827022/1‑68 (MQ=25)
                                  cTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGCCCg                              >  1:18900427/1‑68 (MQ=255)
                                  cTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCg                              >  1:15636628/1‑68 (MQ=255)
                                   tttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGa                             <  1:22510494/68‑1 (MQ=40)
                                        tccccTCCAAACGTATAAACGCGCCTAAGAGTGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                        <  1:21952567/67‑1 (MQ=14)
                                        gCCCCTCCAATATGAAAACCCGGCCGTTCGCGGTTTTTAAGTAAAACAGGTTAAACTGACCGATAAGc                        <  1:5629297/68‑1 (MQ=2)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaaa                                     >  1:26785068/1‑55 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:4565452/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:6192029/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:37064589/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:34116727/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:1378602/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:14131382/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:11985059/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:25145288/1‑67 (MQ=255)
                                        gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                         >  1:16231665/1‑67 (MQ=255)
                                           ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc                     <  1:19479868/68‑1 (MQ=255)
                                           ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc                     <  1:29103641/68‑1 (MQ=255)
                                           ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc                     <  1:8356508/68‑1 (MQ=255)
                                               aaaaaGTTAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttc                 <  1:19875741/67‑1 (MQ=14)
                                                aaaaTTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                <  1:21267569/68‑1 (MQ=255)
                                                aaaaGTATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                <  1:17142562/68‑1 (MQ=255)
                                                aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                <  1:30010353/68‑1 (MQ=255)
                                                aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct                <  1:38254445/68‑1 (MQ=255)
                                                 aaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt                   >  1:1924260/1‑64 (MQ=255)
                                                  aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt              <  1:4795738/68‑1 (MQ=40)
                                                  aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt              <  1:24225985/68‑1 (MQ=40)
                                                    GTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCcgctttatttgg            <  1:33422848‑M1/68‑3 (MQ=255)
                                                     cagAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg           >  1:1163272‑M1/4‑68 (MQ=255)
                                                      AAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg          >  1:332434‑M1/1‑68 (MQ=255)
                                                      AAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg           >  1:30699512‑M1/1‑67 (MQ=255)
                                                      AAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg           >  1:31195106‑M1/1‑67 (MQ=255)
                                                       tAAACCCGCCGTATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:20052872‑M1/2‑68 (MQ=255)
                                                       tAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:36641356‑M1/2‑68 (MQ=255)
                                                       tAAACCCGCCGAAGCGGTTTTTTACGTAAAACAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:806461‑M1/2‑68 (MQ=255)
                                                       cAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:11156027‑M1/2‑68 (MQ=255)
                                                       AAAACCCGCCGTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:34954262‑M1/1‑68 (MQ=255)
                                                       AAAACCCGCCGTATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:32371128‑M1/1‑68 (MQ=255)
                                                       AAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:30273231‑M1/1‑68 (MQ=255)
                                                       AAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:263367‑M1/1‑68 (MQ=255)
                                                       AAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt         >  1:6553046‑M1/1‑68 (MQ=255)
                                                         AACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat       >  1:33835002‑M1/1‑68 (MQ=255)
                                                          ACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGCCCGATAAGCCGCTTTCTTTGGGGtata      <  1:15237584‑M1/68‑1 (MQ=255)
                                                          ACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata      <  1:14877611‑M1/68‑1 (MQ=255)
                                                          ACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata      <  1:11354736‑M1/68‑1 (MQ=255)
                                                           CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg     <  1:589825‑M1/68‑1 (MQ=255)
                                                           CCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTGTGgggtagag     <  1:1238605‑M1/68‑4 (MQ=255)
                                                            CCGCCGTACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt    >  1:35933658‑M1/1‑68 (MQ=255)
                                                            CCGCCGCACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt    >  1:7296683‑M1/1‑68 (MQ=255)
                                                            CCGCCGCACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt    >  1:3273190‑M1/1‑68 (MQ=255)
                                                            CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt    >  1:2945402‑M1/1‑68 (MQ=255)
                                                            CCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt    >  1:28255142‑M1/1‑68 (MQ=255)
                                                              GCCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:2877445‑M1/1‑68 (MQ=255)
                                                              GCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:7639380‑M1/1‑68 (MQ=255)
                                                              GCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:27878073‑M1/1‑68 (MQ=255)
                                                              GCCGTAGCGGGTTTCTACGTAAAACCGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:28517695‑M1/1‑68 (MQ=255)
                                                              GCCGCAGCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:33087214‑M1/1‑68 (MQ=255)
                                                              GCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTatagcgt  >  1:3632660‑M1/1‑65 (MQ=255)
                                                              GCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:10563819‑M1/1‑68 (MQ=255)
                                                              GCCGAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:26556601‑M1/1‑68 (MQ=255)
                                                              GCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:1677052‑M1/1‑68 (MQ=255)
                                                              GCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:31789046‑M1/1‑68 (MQ=255)
                                                              GCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:7013916‑M1/1‑68 (MQ=255)
                                                              GCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:3427608‑M1/1‑68 (MQ=255)
                                                              GCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:10836511‑M1/1‑68 (MQ=255)
                                                              GCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:17792298‑M1/1‑68 (MQ=255)
                                                              GCCGAAGCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:37409333‑M1/1‑68 (MQ=255)
                                                              GCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt  >  1:31540088‑M1/1‑68 (MQ=255)
                                                               |                                                                  
TCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGT  >  CP009273/3263262‑3263391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.