| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2279605 = | 339 (0.710) | 21 (0.060) | 9/86 | NT | 8.7% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 179 (0.490) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
Only 100 of 488 total aligned reads displayed.
TTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279571‑2279705 | tATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGaa < 1:11447823/67‑1 (MQ=255) tATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGaa < 1:15798075/67‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:588210/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:330166/68‑1 (MQ=255) ttGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAata < 1:34036663/68‑1 (MQ=255) gttttccacaccgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:10433758‑M1/38‑1 (MQ=255) cAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCt > 1:9446300/1‑68 (MQ=255) aGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTa < 1:8389561/68‑1 (MQ=255) ccacaccgattgcaagtaagatattTGGCTTACTGATTAATTATAAATAAGTTAGCGAAATATCtt < 1:29285155‑M1/41‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTAc < 1:27860852/66‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACtt > 1:27258346/1‑68 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:32391812/67‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:36119453/67‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:23575371/67‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:31672593/67‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:8130083/67‑1 (MQ=255) tGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:19189548/67‑1 (MQ=255) tGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:13376406/67‑1 (MQ=255) accgattgcaagtaagatatttcgctaactgatttattattaatcagttagcgaTTTATCTTACTtgg > 1:3014503‑M2/55‑67 (MQ=255) accgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTTGCGAAATATCTTACTTGc < 1:24506177‑M1/47‑1 (MQ=255) accgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGc < 1:18318259‑M1/47‑1 (MQ=255) gACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCa < 1:21627285/68‑1 (MQ=255) ccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCa < 1:38555752‑M2/15‑1 (MQ=255) ccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCa < 1:38174723‑M2/15‑1 (MQ=255) cAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCaa > 1:30747462/1‑67 (MQ=255) cAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCaa > 1:34341982/1‑67 (MQ=255) tgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCgg < 1:2045903‑M2/20‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCgg < 1:22353386/67‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:31004424/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:25370684/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:34523262/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:26805244/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:28757318/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:29596937/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:22108916/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:15450318/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:4866625/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:16462785/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:37439399/68‑1 (MQ=255) cGAGAAGCGTATTATCGCAAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt > 1:26137047/1‑68 (MQ=255) aagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGgtgt < 1:12758723‑M2/23‑1 (MQ=255) gaAGCGGTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtgt < 1:35394758/67‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa < 1:1953590/68‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa < 1:24800641/68‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa < 1:17211265/68‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa > 1:20241407/1‑68 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa < 1:23054521/68‑1 (MQ=255) gTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaaa < 1:24280465/67‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:38403839/68‑1 (MQ=255) gttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:7414416/67‑1 (MQ=255) ttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg < 1:7123396/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:37093758/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:11118187/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:2974990/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:9174272/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:10237/68‑1 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta > 1:24035529/1‑68 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta < 1:25770267/68‑1 (MQ=255) tccctaactgatttataattaaacagtaagcgaAAAATCTTACTTGCAATCGGTGTGGAAAACGgtag < 1:18902819‑M2/35‑1 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAaacgggag > 1:37763‑M1/1‑65 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:12428835‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:19392192‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:36543871‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:394511‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:13084952‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:26529009‑M1/1‑68 (MQ=255) CGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagt > 1:13803762‑M1/1‑68 (MQ=255) ACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTa < 1:6171910‑M1/67‑1 (MQ=255) TGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTagca < 1:11906103‑M1/68‑1 (MQ=255) GATTAATTATAACTCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTagcag > 1:28363087‑M1/1‑68 (MQ=255) TTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTagcagc > 1:4430176‑M1/1‑67 (MQ=255) TTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGcc > 1:18563370‑M1/1‑68 (MQ=255) attaTAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACg > 1:6956321/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:17738957/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:19784049/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:36929444/1‑68 (MQ=255) ataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:14526714/1‑67 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:4508661‑M2/13‑68 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:27983013‑M2/13‑68 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:38875334‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:35229157‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:33805794‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:32891346‑M2/12‑67 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCGCGAGTCGGCAc < 1:21134399‑M2/58‑1 (MQ=255) agttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACg > 1:30289304‑M2/10‑68 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:29386180‑M2/66‑1 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:15068913‑M2/66‑1 (MQ=255) aAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa > 1:23435525‑M2/2‑67 (MQ=255) aAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa > 1:5086406‑M2/2‑67 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:149001/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:12894385/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:10600684/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:16052896/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:35809517/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:19938721/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:34952860/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:22683339/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:3357306/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:31369686/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:28545622/68‑1 (MQ=255) | TTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279571‑2279705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |