New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292362 (0.760)21 (0.050) 12/98 NT 5.8% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 364 (0.880)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 478 total aligned reads displayed.

AATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499256‑2499387
                                                                 |                                                                  
aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:22825890‑M2/1‑66 (MQ=255)
aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:20050072‑M2/1‑66 (MQ=255)
aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:14406473‑M2/1‑66 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCTGCATCGTCAACCAGCTGGCAGCGCAcg                                                                  <  1:22675898‑M2/67‑3 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:31320996‑M2/67‑3 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:8147436‑M2/67‑3 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:4091656‑M2/67‑3 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:5551188‑M2/67‑3 (MQ=255)
  tAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgcc                                                                <  1:21511382‑M2/68‑5 (MQ=255)
     tCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             <  1:27212392‑M2/68‑8 (MQ=255)
     tCGCCATAACCAGCTTCTGTAAACACCCGGCGCGCGGCATCGTCAACCTGCTGGCACCGCAcgccggg                                                             <  1:7586810‑M2/68‑8 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:2476463‑M2/1‑60 (MQ=255)
      cGCCATAACCTGCTGCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:5467427‑M2/1‑60 (MQ=255)
      cGCCATAACCTCCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:20839160‑M2/1‑60 (MQ=255)
             aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATc                                                      >  1:39133723/1‑67 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCACCCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:7270702/1‑68 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:11616795/1‑68 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:17466642/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   <  1:28919269/68‑1 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:14782680/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:32819945/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:16405744/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:23339783/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:21889345/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:38714723/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGCGCGAATcgcg                                                   >  1:12204715/1‑68 (MQ=255)
                  cTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                >  1:38373783/1‑68 (MQ=255)
                   ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:15069247/67‑1 (MQ=255)
                   ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:9191633/67‑1 (MQ=255)
                    tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:12473708/1‑68 (MQ=255)
                     cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcagg                                             >  1:17309781‑M2/1‑45 (MQ=255)
                       gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc                                           <  1:13039875/68‑1 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:37606839/1‑67 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:24424593/1‑67 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAGtgct                                          >  1:4579803/1‑67 (MQ=255)
                           tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCAAATCGCGGAGATTGCTGCg                                       >  1:6999164/1‑68 (MQ=255)
                           tGACCCGGCGCACGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:10011238/1‑68 (MQ=255)
                            gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      <  1:22277229/68‑1 (MQ=255)
                            gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:2688097/1‑68 (MQ=255)
                            gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:27473074/1‑68 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGTGATTGCTGCGa                                      >  1:13283743/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCgc                                      >  1:33176762/1‑65 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:10203269/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:32076758/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:5035509/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:9448953/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:33381106/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:17540110/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:16726437/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg                                     <  1:11201702/67‑1 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg                                     <  1:11955694/67‑1 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCAGGCAGCGCACGCCGGGGCGAATAGCGGAGATTGCTGCGa                                      >  1:27870781/1‑66 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGCGATTGCTGCGAGCtgt                                 <  1:31561699/68‑1 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:25997345/68‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAGTCGCGGAGATGGCTGCGAGCtgtg                                >  1:28515773/1‑67 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:33895966/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:36755593/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:4302822/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:8563591/1‑67 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCTGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:35809645/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:16253206/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:18264379/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:15632409/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:10609917/67‑1 (MQ=255)
                                      gcgGCATAGTCAACCTGCTGGCAGCTCACGACGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:34340294/67‑1 (MQ=255)
                                        ggCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcaggttatggcgactatttcgg                           >  1:22193437‑M2/1‑26 (MQ=255)
                                         gCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAg                         >  1:5363002/1‑68 (MQ=255)
                                           aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:8974806/67‑1 (MQ=255)
                                           aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:6239439/67‑1 (MQ=255)
                                             cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:26536744/68‑1 (MQ=255)
                                              gTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACaa                    >  1:34518793/1‑68 (MQ=255)
                                              gTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACaa                    >  1:25674969/1‑68 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:31179401/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:8825202/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:15832465/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:29801287/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:1647277/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:30680078/67‑1 (MQ=255)
                                                  aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:33590011/1‑68 (MQ=255)
                                                   ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:37954632/1‑68 (MQ=255)
                                                   ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:25161374/1‑68 (MQ=255)
                                                    ctgctgGCGGCGCACGCCGGGGCGAATCCCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGAt              >  1:32410003/1‑68 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          >  1:23984891/1‑68 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:28094683/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:28209425/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:12755263/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:13781176/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:7121405/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:29448891/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:18978088/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:5903170/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:19803146/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:23655993/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:39580929/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:26957360/68‑1 (MQ=255)
                                                          gCAGCGCAcgccgggtcattacagaagcaggttatggcgactatttcggtcataacaccggtcacgc         >  1:34916418‑M2/1‑8 (MQ=255)
                                                            aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTa      >  1:19270416/1‑68 (MQ=255)
                                                                cACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  >  1:34729030/1‑68 (MQ=255)
                                                                 aCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:35525990/67‑1 (MQ=255)
                                                                 aCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:31454106/67‑1 (MQ=255)
                                                                 |                                                                  
AATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499256‑2499387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.