New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 442683374 (0.900)25 (0.070) 12/90 NT 6.3% coding (479/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 = 442722 441 (1.320)coding (440/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 175 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/442606‑442683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgccgcCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  CP009273/442722‑442657
                                                                                                                                                
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              <  1:13416705/68‑1
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           <  1:14033192/68‑1
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:7344656/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:17631840/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:20892185/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:34005293/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:22270190/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:8823302/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:22624464/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:33391614/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:2501286/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:26050505/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:26661374/1‑65
   AGCGGAAAATGGCGATGGCATACGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:4825466/1‑65
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:10033421/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:20933033/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:3106116/1‑67
         AAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                                      <  1:12413533/67‑1
                          GAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCT                                                        >  1:25506795/1‑64
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGTCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAG                                    >  1:31827012/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAG                                    >  1:12951497/1‑68
                                            AGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGCGCGGCTACTGTGCGGTAGCCGGTGAGT                                   >  1:28200880/1‑67
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCG                                >  1:23074359/1‑68
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACAGTGCGGGAACCGGTGAGTTCG                                >  1:26340134/1‑68
                                                    GATAGCCAGCAGGTTCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:10574724/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:11720909/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTACGATAGCG                          >  1:2940629/1‑68
                                                        GCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC                      >  1:31472835/1‑68
                                                         CCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCA                     >  1:18639431/1‑68
                                                             CAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGC                   >  1:27834503/1‑66
                                                             CAGGATCGCTGCGCCGCCGGGGATCGGCTACTGTGCGGGAACCGGTGAGTTCGATAGCGGCGCAGC                   >  1:10424994/1‑66
                                                              AGGATCGCTGCGCCGCCGGTGATCGGCGACTGTGCGGTAACCGGTGAGTTAGATATCGGCGCAGCGA                 >  1:14503597/1‑67
                                                              AGGATCGCTGCGCCGCCGGTGATCGGCGACTGTGCGGTAAACGGTGAGTTAGATAGCGGCGCAGCGA                 >  1:19044478/1‑67
                                                               GGATCGCTGCGCCGCCGGTGATAGGCTAATGTGCGGTAACCGGTGAGTTAGATAGCGGCGCAGCCAT                >  1:1439229/1‑67
                                                                   CGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCCGCGATCCT             >  1:29911212/1‑66
                                                                    tCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGC           <  1:24895082/66‑1
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCT          <  1:28154709/68‑1
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCT          <  1:14870469/68‑1
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGC           <  1:11564119/67‑1
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:3263908/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:28607477/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:11339761/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:14700361/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:33321201/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:24213647/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:23002029/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:33476709/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:6319653/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:16799673/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:17844539/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:13734530/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:3841712/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:18869215/1‑65
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         <  1:29287804/67‑1
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         <  1:15442212/67‑1
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:30543311/1‑67
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:2640073/1‑67
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:13254572/1‑67
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGGGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:21614502/1‑67
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTTACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:2182817/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:9396955/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:3552360/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:7321066/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:5361801/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:33005879/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:20612622/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:10184870/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:17813166/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:184609/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:19262848/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:27572195/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTGCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:7389522/68‑1
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:25256805/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:7908485/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:23144875/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:22872261/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:8365702/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:29158671/1‑68
                                                                           CGCCGTTGATCGTCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:27510112/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCTGCGCAGCGATCCTGCTGGCTATC   <  1:13536312/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:7679851/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:12241418/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:15842723/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:5904798/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:8081994/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:26979785/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:4214149/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:34265655/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:22175539/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:24677654/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:24695675/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:25144747/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:31579713/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTAT    <  1:27668339/67‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTAT    <  1:30880028/67‑1
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  1:6101151/68‑1
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  >  1:562809/1‑68
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  >  1:33718212/1‑68
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  1:12030848/68‑1
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  1:31558931/68‑1
                                                                                                                                                
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/442606‑442683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgccgcCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  CP009273/442722‑442657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.