| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 442683 | 374 (0.900) | 25 (0.070) | 12/90 | NT | 6.3% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 441 (1.320) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
Only 100 of 806 total aligned reads displayed.
AAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCT > CP009273/442656‑442789 | aGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgc > 1:12651926‑M2/1‑66 (MQ=255) aGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgc > 1:14593048‑M2/1‑66 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:34265655‑M2/68‑4 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGACGATCAACGgcg < 1:27510112‑M2/68‑4 (MQ=255) aTAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:26439477‑M2/67‑4 (MQ=255) tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc > 1:8365702‑M2/1‑63 (MQ=255) tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc > 1:12001883‑M2/1‑63 (MQ=255) gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc < 1:33005879‑M2/68‑8 (MQ=255) gcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcaga < 1:24895082‑M2/67‑11 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:18869215‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:3263908‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:33321201‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:14235090‑M2/1‑55 (MQ=255) agGATCGCGGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcg > 1:29911212‑M2/1‑55 (MQ=255) ggATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCg > 1:17268341/1‑68 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc < 1:27111689/65‑1 (MQ=255) gCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag < 1:26063773‑M1/67‑1 (MQ=255) gCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga < 1:10007112‑M1/66‑1 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga > 1:3621530‑M1/1‑68 (MQ=255) gCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctg > 1:27834503‑M2/1‑49 (MQ=255) TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg < 1:5168546‑M1/68‑1 (MQ=255) GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa > 1:28003842‑M1/1‑68 (MQ=255) GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa > 1:30302470‑M1/1‑68 (MQ=255) CGCTATCGAACTCACCGGTTACCGCGCAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:32270864‑M1/1‑67 (MQ=255) cGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAAc < 1:3136808/68‑1 (MQ=255) aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:19088925/1‑68 (MQ=255) aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:25208608/1‑68 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:16861886/1‑67 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt < 1:23175331/67‑1 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:5947175/1‑67 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:22844513/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:2458875/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:8974461/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:25695335/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:8833313/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:729582/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:27655992/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:30874648/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:9581511/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:28291445/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:10366774/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:16618051/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:17650739/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:18467417/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:11384029/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:11087121/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:21766621/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:2206795/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:10850970/68‑1 (MQ=255) tCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGcc > 1:5652815/1‑68 (MQ=255) tCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGcc > 1:23705165/1‑68 (MQ=255) ccGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTa < 1:21379016/68‑1 (MQ=255) ccGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTa < 1:15405084/68‑1 (MQ=255) ccGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTa > 1:286857/1‑68 (MQ=255) cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg < 1:28920909/68‑1 (MQ=255) cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg < 1:4582001/68‑1 (MQ=255) ttACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGAc < 1:31114930/67‑1 (MQ=255) tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACag > 1:13980557/1‑68 (MQ=255) tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACa < 1:13227748/67‑1 (MQ=255) tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACa < 1:4830634/67‑1 (MQ=255) cccGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga < 1:11746973/67‑1 (MQ=255) aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga < 1:9314107/68‑1 (MQ=255) aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga < 1:14811626/68‑1 (MQ=255) aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga < 1:4265574/68‑1 (MQ=255) cGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGt < 1:14721969/68‑1 (MQ=255) cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg > 1:2047345/1‑67 (MQ=255) acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGCACCAATCAACGTGCCGTAGACAGAGTGGc > 1:33470034/1‑68 (MQ=255) acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTCGACAGAGTGGc > 1:13615363/1‑68 (MQ=255) acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc > 1:1289451/1‑68 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCg < 1:652007/64‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:12271700/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:22517743/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:7737721/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:18059939/67‑1 (MQ=255) gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCCTAGACAGAGTGGCGTTTCa > 1:1952307/1‑68 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAAt > 1:33687721/1‑37 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg > 1:31793553/1‑68 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg > 1:16386616/1‑68 (MQ=255) gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt < 1:22275368/68‑1 (MQ=255) gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt < 1:29483944/68‑1 (MQ=255) gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt < 1:30655555/68‑1 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt > 1:19384596/1‑67 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt > 1:29280502/1‑67 (MQ=255) tCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTAc < 1:4041593/68‑1 (MQ=255) aCCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAg > 1:7629984/1‑68 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:15785406/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:31556423/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:24187697/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:24328769/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:25482523/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:21127452/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:20200863/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:6890199/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:19826212/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:33908085/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:34482082/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:34766112/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:1708511/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTAAAgg < 1:8021685/68‑1 (MQ=255) cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc < 1:2682638/68‑1 (MQ=255) | AAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCT > CP009273/442656‑442789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |