BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 521461	NA (NA)	4 (0.010)	3/102	NT	100%	coding (2745/4281 nt)	rhsD	Rhs family putative polymorphic toxin
*	?	CP009273	= 521483	0 (0.000)	4 (0.010)	3/102	NT	100%	coding (2767/4281 nt)	rhsD	Rhs family putative polymorphic toxin

Only 100 of 117 total aligned reads displayed.

GGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACccggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/521395‑521461

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  <  CP009273/521483‑521413

GGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACC                                                                        <  1:18321529/68‑1

GGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACC                                                                        <  1:14462884/68‑1

GGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACC                                                                        <  1:14832923/68‑1

  GCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCG                                                                      >  1:16615816/1‑68

  GCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCG                                                                      >  1:2899173/1‑68

  GCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCG                                                                      >  1:1718802/1‑68

  GCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCG                                                                      >  1:8195491/1‑68

  GCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCAGTATGCCACGGACCCa                                                                      >  1:18757508/1‑67

   CAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGG                                                                     >  1:31285606/1‑68

   CAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCG                                                                      >  1:17724079/1‑67

   CAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCG                                                                      >  1:19635816/1‑67

       CTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGC                                                                    <  1:9819648/65‑1

       CTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGC                                                                    <  1:28288883/65‑1

                                                   CCCGTATGCCACGGACCCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATTCGGGGTGGGGATGTCCAG                     >  1:6110045/1‑68

                                                    CCGTATGCCACGGACCCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTGCAGG                    >  1:9381693/1‑68

                                                          GCCACGGCCCCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGT              >  1:22378829/1‑68

                                                          GCCACGGACCCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGT              >  1:15915750/1‑68

                                                                  gCCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGG       <  1:4882292/66‑1

                                                                  gCCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGG       <  1:24598043/66‑1

                                                                  CCCGGCAGCCGTTTGCCCGCCGGGGCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGG       <  1:21577826/67‑1

                                                                   cctGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:14155309/65‑1

                                                                   CCGGCAGCCGTTTTCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:31468932/68‑1

                                                                   CCGGCAGCCGGTTGCCCGGCGGGTCCGTGGCATACGGGATGCGGTTGTCCAGGTCTGGTGCGAGGGTG     <  1:6109465/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:25141136/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:34621860/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:22542662/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:22789475/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:23527986/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:7615781/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:24198623/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:13068975/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:32448936/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:8521085/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:2562567/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:25852619/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:26510835/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:9408574/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:28454754/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:2987676/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:30518734/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:4472332/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:1079269/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:32737043/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:20852575/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:4909936/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:161669/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:20275563/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:7752585/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:14358452/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:5035733/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:19386927/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:7916573/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:8164098/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:15369256/68‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGT      >  1:15314979/1‑67

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGT      >  1:6558262/1‑67

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGT      <  1:34423161/67‑1

                                                                   CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGT      <  1:20521918/67‑1

                                                                   CCGGCACGCGGGTGGCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGT      <  1:27318330/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGC    <  1:34756571/68‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGC    <  1:34319364/68‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:5450197/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:34119079/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:21079467/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:6253456/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:30770163/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:24789431/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:21424600/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:19421092/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:17385428/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:16191379/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:16059182/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:13786649/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:1323086/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:11486290/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:10817171/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:10385905/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGGCTGGTGCGAGGGTGC    <  1:20632743/68‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGTCCGGGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:10429426/67‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGGCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGC    <  1:12909122/68‑1

                                                                    CGGCAGCCGGTTGCCCGCCGGGGCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:19093264/67‑1

                                                                    CGGCAGCAGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTG     <  1:23750341/67‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATGCGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:33576843/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGGGGGTGCG   <  1:6621016/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:7877306/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:9841984/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:13550695/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:18026476/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:18134682/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:2009704/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:5940236/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:28120483/68‑1

                                                                     GGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCG   <  1:31969793/68‑1

                                                                      GCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  >  1:332666/1‑68

                                                                      GCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  >  1:17343314/1‑68

                                                                      GCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  >  1:31845865/1‑68

                                                                      GCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  >  1:33723991/1‑68

                                                                       CAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  >  1:33230042/1‑67

                                                                       CAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  >  1:6581088/1‑67

                                                                       CAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  >  1:11402100/1‑67

GGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACccggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/521395‑521461

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAGCCGGTTGCCCGCCGGGTCCGTGGCATACGGGATGCGGATGTCCAGGTCTGGTGCGAGGGTGCGC  <  CP009273/521483‑521413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.