| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 521461 | NA (NA) | 4 (0.010) | 3/102 | NT | 100% | coding (2745/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 521483 | 0 (0.000) | coding (2767/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
CACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGGATAACCGCATCGCGGAGGATGCGCA > CP009273/521416‑521550 | cACCCTCGCACCAGACCTGGACATCCGCATCGCGTATGCCACGGTCGCGGCGGGAAACCGGATGGCGG < 1:33634718‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCCCGGACCCGGCGGGCAACCGGCTGCCGG < 1:19049146‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:32448936‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:22789475‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:23527986‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:24198623‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:25141136‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:2562567‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:25852619‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:26510835‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:28454754‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:2987676‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:30518734‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:3186552‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:1162538‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:32737043‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:34621860‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:4472332‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:4909936‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:5035733‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:7615781‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:7752585‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:7916573‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:8164098‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:8521085‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:9408574‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:15369256‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:161669‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:17349599‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:20852575‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:20275563‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:22542662‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:1079269‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:14358452‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:14202815‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:19386927‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:13068975‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGAAAACGGCTGCCGG < 1:31468932‑M2/68‑1 (MQ=255)cACCCTCGCACCAGACCTGGACAACCGCATCCCGTATGCCACGGACCCGCCGGGCAACCGGCTGCCGG < 1:6109465‑M2/68‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGg > 1:8450436‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:20521918‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG > 1:6558262‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:29529687‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:34423161‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG > 1:15314979‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGCCACCCGCGTGCCGG < 1:27318330‑M2/67‑1 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGCCCCGGCGGGCAAACGGCTGCCGGg < 1:21577826‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgt > 1:6084603‑M2/1‑66 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:6856291‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:24598043‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:4882292‑M2/67‑2 (MQ=255) aCCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggc > 1:15915750‑M2/1‑59 (MQ=255) aCCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGggccgtggc > 1:22378829‑M2/1‑59 (MQ=255) ccTGCACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggcatacgg > 1:9381693‑M2/1‑53 (MQ=255) cTGGACATCCCCACCCCGAATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggcatacggg > 1:6110045‑M2/1‑52 (MQ=255) gCCGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccag < 1:9819648‑M2/65‑61 (MQ=255) gCCGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccag < 1:28288883‑M2/65‑61 (MQ=255) gCCGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccag < 1:25982444‑M2/65‑61 (MQ=255) ccGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctg > 1:31285606‑M2/1‑4 (MQ=255) tgggtccgtggcatactggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgc > 1:18757508‑M2/2‑3 (MQ=255) cGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgc > 1:16615816‑M2/1‑3 (MQ=255) cGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgc > 1:1718802‑M2/1‑3 (MQ=255) cGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgc > 1:8195491‑M2/1‑3 (MQ=255) cGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgc > 1:2899173‑M2/1‑3 (MQ=255) cGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctg > 1:17724079‑M2/1‑3 (MQ=255) cGGgtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctg > 1:19635816‑M2/1‑3 (MQ=255) ggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgccc < 1:14832923‑M2/68‑68 (MQ=255) ggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgccc < 1:14462884‑M2/68‑68 (MQ=255) ggtccgtggcatacgggatgcggatgtccaggtctggtgcgagggtgcgcacactctccagcctgccc < 1:18321529‑M2/68‑68 (MQ=255) | CACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGGATAACCGCATCGCGGAGGATGCGCA > CP009273/521416‑521550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |