| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 521461 | NA (NA) | 4 (0.010) | 3/102 | NT | 100% | coding (2745/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 521483 | 0 (0.000) | coding (2767/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 103 total aligned reads displayed.
GCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCC > CP009273/521413‑521499 | gcgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGC > 1:17343314‑M2/1‑68 (MQ=255)gcgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGC > 1:31845865‑M2/1‑68 (MQ=255)gcgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGC > 1:33723991‑M2/1‑68 (MQ=255)gcgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTG > 1:11402100‑M2/1‑67 (MQ=255)gcgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTG > 1:6581088‑M2/1‑67 (MQ=255)gcgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTG > 1:33230042‑M2/1‑67 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:9841984‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:18026476‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:18134682‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:2009704‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:28120483‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:31969793‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:13550695‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:3560452‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:5940236‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:7877306‑M2/68‑1 (MQ=255) cgcACCCTCGCACCAGACCTGGACATCCGCATCCCGCATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:33576843‑M2/68‑1 (MQ=255) cgcACCCCCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCC < 1:6621016‑M2/68‑1 (MQ=255) gcACCCTCGCACCAGCCCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:20632743‑M2/68‑1 (MQ=255) gcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGCCCCGGCGGGCAACCGGCTGCCG < 1:12909122‑M2/68‑1 (MQ=255) gcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:34319364‑M2/68‑1 (MQ=255) gcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:34756571‑M2/68‑1 (MQ=255) gcACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:15966893‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCGCGTATGCCACGGTCGCGGCGGGAAACCGGATGGCGG < 1:33634718‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCCCGGACCCGGCGGGCAACCGGCTGCCGG < 1:19049146‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCCCGGACCCGGCGGGCAACCGGCTGCCG < 1:10429426‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGCCCCGGCGGGCAACCGGCTGCCG < 1:19093264‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCTGCTGCCG < 1:23750341‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCagg < 1:14155309‑M2/68‑4 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:13068975‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:28454754‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:2987676‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:30518734‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:3186552‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:15369256‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:32448936‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:32737043‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:14358452‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:14202815‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:34621860‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:17349599‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:4472332‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:4909936‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:5035733‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:1162538‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:7615781‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:7752585‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:1079269‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:7916573‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:8164098‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:8521085‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:9408574‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:26510835‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:161669‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:20275563‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:20852575‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:19386927‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:22542662‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:22789475‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:23527986‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:24198623‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:25852619‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:25141136‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:2562567‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:11486290‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:6253456‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:16059182‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:16191379‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:5450197‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:21079467‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:21424600‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:19421092‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:10385905‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:21960992‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:1323086‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:10817171‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:13786649‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:34119079‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:30770163‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:20289759‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:24519178‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:17385428‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCG < 1:24789431‑M2/67‑1 (MQ=255) cACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGAAAACGGCTGCCGG < 1:31468932‑M2/68‑1 (MQ=255) cACCCTCGCACCAGACCTGGACAACCGCATCCCGTATGCCACGGACCCGCCGGGCAACCGGCTGCCGG < 1:6109465‑M2/68‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGg > 1:8450436‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG > 1:6558262‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:29529687‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG < 1:34423161‑M2/67‑1 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGG > 1:15314979‑M2/1‑67 (MQ=255) aCCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGCCACCCGCGTGCCGG < 1:27318330‑M2/67‑1 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGCCCCGGCGGGCAAACGGCTGCCGGg < 1:21577826‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgt > 1:6084603‑M2/1‑66 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:6856291‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:4882292‑M2/67‑2 (MQ=255) cccTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGc < 1:24598043‑M2/67‑2 (MQ=255) aCCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggc > 1:15915750‑M2/1‑59 (MQ=255) aCCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGggccgtggc > 1:22378829‑M2/1‑59 (MQ=255) ccTGCACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggcatacgg > 1:9381693‑M2/1‑53 (MQ=255) cTGGACATCCCCACCCCGAATGCCACGGACCCGGCGGGCAACCGGCTGCCGGgtccgtggcatacggg > 1:6110045‑M2/1‑52 (MQ=255) | GCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCC > CP009273/521413‑521499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |