New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1161584	203 (0.490)	10 (0.020)	8/108	NT	5.1%	coding (44/1305 nt)	ndh	respiratory NADH dehydrogenase 2/cupric reductase
	?	CP009273	1162080 =	178 (0.440)					coding (540/1305 nt)	ndh	respiratory NADH dehydrogenase 2/cupric reductase

AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161523‑1161584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCA  >  CP009273/1162080‑1162130                                                                                                                   AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGG                                               >  1:122254/1‑68  AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGT                                              >  1:3727221/1‑68         GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACTGGTCTAGAAa                                       >  1:3417277/1‑67                  GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGCTGGTGTAGAAATCGCCGCTG                              >  1:5841432/1‑68                      ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTCTAGAACTCTCCGCTGAATT                          >  1:31794984/1‑68                       CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAA                                        >  1:28192332/1‑53                            CCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGTCTGGTGTAGAACTCTCCGCTGAAGTGCACca                    >  1:12879355/1‑66                            CCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTTGAACTCTCCGCTGACATGCGCAA                    >  1:29224691/1‑68                                              ATTGTCGGCGGCGGTGCGAGGGGTGTTGAACTCTCCGCTGAATTGCACAACCAGGTCAAGCGACTGCA  >  1:33464955/1‑68                                              ATTGTCGGCGGCGGTGCGACGGGTGTAGAACTCTCCGCTGAATTGCCCAACGCGGTCCCGCAACTGCA  >  1:22274807/1‑68                                                                                                                   AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161523‑1161584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCA  >  CP009273/1162080‑1162130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.