| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161584 | 203 (0.490) | 10 (0.020) | 8/108 | NT | 5.1% | coding (44/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162080 = | 178 (0.440) | coding (540/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 216 total aligned reads displayed.
TAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAAT > CP009273/1161519‑1161647 | taataaATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCt < 1:29293141/67‑1 (MQ=255)taataaATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCt < 1:30969467/67‑1 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:1893985/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:11343318/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgacggg > 1:122254‑M1/1‑62 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:14796540/1‑67 (MQ=255) tAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTgg > 1:32058878/1‑68 (MQ=255) aGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCGGGaa > 1:23802939/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgactggtctagaaa > 1:3417277‑M1/1‑54 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGata > 1:23661261/1‑66 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:23924501/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:33169301/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:20294746/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:27689887/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:17633575/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGGGGGCTAGaaa > 1:3985384/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGGTGGTCTAGaaa > 1:16822142/1‑68 (MQ=39) gggggTCACGTTGACTACGCCATTGAAAAAGATTGAGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:27560434/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:2323348/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:22451980/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:9072108/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:2104107/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:30112795/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:8617578/1‑68 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:23985747/67‑1 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:9354998/67‑1 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:5309775/67‑1 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:657303/67‑1 (MQ=255) gTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGc > 1:33708391/1‑68 (MQ=255) aCGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTTGGCTGGAAATGGCAac < 1:19810362/68‑1 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGTCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:18678516/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCggctggtgtagaaatcgccgctg > 1:5841432‑M1/1‑45 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:17566214/1‑68 (MQ=255) ttGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:29470063/1‑68 (MQ=255) ttGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:22620424/1‑68 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:27005902/1‑67 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:26829801/1‑67 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca < 1:22477495/67‑1 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:13400144/1‑67 (MQ=255) gACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:10866279/68‑1 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:7232669/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:25857988/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:17945110/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:26626030/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:29255004/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:4521748/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:18373704/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCCGCGGCGGTGCTGGTGGGCTGGAAATGCCAAcaca > 1:34014778/1‑65 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgacgggtgtagaa > 1:28192332‑M1/1‑40 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATAGCAACACAGCTg > 1:3291083/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:17032179/1‑68 (MQ=255) cgcgATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:30554380/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:7588695/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:10751832/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:3743125/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:11841984/68‑1 (MQ=255) gCCATTGAAAAAGATTGTGATTGTCGGCGGCTGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGc < 1:34647156/68‑1 (MQ=255) gCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGc < 1:2158964/68‑1 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:2921295/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:6085254/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:2564785/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:30514250/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:30624816/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:31471452/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTAGGCGGCGGTGCTTGTGGGATGGCAATGGCAACACAGCTGGGGCa > 1:23380188/1‑68 (MQ=255) aTTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATa > 1:14525050/1‑68 (MQ=255) aTTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATa > 1:29935445/1‑68 (MQ=255) tGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:2692727/57‑1 (MQ=255) tGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:2649702/57‑1 (MQ=255) aaaaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTg > 1:28769275/1‑68 (MQ=255) aaaaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTg > 1:12831486/1‑68 (MQ=255) aaaaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTg > 1:642460/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:32522026/1‑68 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:21984600/1‑67 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:28882824/1‑67 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:2829356/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGGTGGGGCATAAGCTGGGAc > 1:11173979/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:15105394/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:8299881/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:33872374/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:31522422/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:26717785/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:10222764/1‑67 (MQ=255) ttgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACg < 1:3724571/67‑1 (MQ=255) tgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCa < 1:14053855/68‑1 (MQ=255) tgtgattgtCGGCGGCCGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCGGGGACGCa < 1:31638623/68‑1 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGa > 1:3190917/1‑68 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGa > 1:18285499/1‑68 (MQ=255) attgtCGGCGGCGGTGCgaggggtgttgaactctccgctgaattgcacaaccaggtcaagcgactgca > 1:33464955‑M1/1‑17 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGAATAAGCTGGGACGCAAGaa > 1:6775967/1‑68 (MQ=255) tgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaa > 1:4865712/1‑68 (MQ=255) tCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaaaa > 1:14352718/1‑68 (MQ=255) ggcggcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGc < 1:23725122/68‑1 (MQ=255) ggcggcggTGCTGGGGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGc < 1:15894279/68‑1 (MQ=255) ggcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaa > 1:24526198/1‑68 (MQ=255) gcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa > 1:24713054/1‑68 (MQ=255) gcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa > 1:2231340/1‑68 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:10432969/67‑1 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:15684588/67‑1 (MQ=255) cggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:19015659/67‑1 (MQ=255) | TAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAAT > CP009273/1161519‑1161647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |