| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161584 | 203 (0.490) | 10 (0.020) | 8/108 | NT | 5.1% | coding (44/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162080 = | 178 (0.440) | coding (540/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 247 total aligned reads displayed.
CCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA > CP009273/1162014‑1162144 | ccTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGcgcg > 1:28458186/1‑67 (MQ=255) aaatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggtgcGACggg > 1:122254‑M2/63‑68 (MQ=255) aatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggtgcGACGGgt > 1:3727221‑M2/62‑68 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACggg < 1:14388768/67‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:10068183/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:4019658/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:26115461/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:20503619/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:19581263/68‑1 (MQ=255) aTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtg > 1:15764056/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:33726345/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:28894162/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:27283602/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:23840971/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGAGGCGCGACGGgtgt > 1:3299872/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:13266030/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:6075738/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:33455216/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAAAGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:16884791/1‑68 (MQ=255) aCTACGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:22428299/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:9785688/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:18683591/1‑68 (MQ=255) gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggtgcGACTGGTCTAgaaa > 1:3417277‑M2/55‑67 (MQ=255) gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggcGCTTCGGGTGTAGaa > 1:15574793‑M2/53‑67 (MQ=255) gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGa > 1:18581578‑M2/53‑66 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggcGCTTCTGGTGTAGAAc > 1:30642753‑M2/52‑67 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACTGGTCTAgaaa > 1:22004616‑M2/52‑66 (MQ=255) gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:22361251/1‑67 (MQ=255) cAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAActc > 1:25607068/1‑67 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:1729303/68‑1 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:15452773/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:31578795/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:34435012/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:14442494/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:21013770/1‑67 (MQ=255) tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:10719582/1‑65 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggtgcGGCTGGTGTAGAAATCGCCGCTg > 1:5841432‑M2/46‑68 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggcGCGACGGGGCTAGAAATCTCAGCTg > 1:22638899‑M2/44‑68 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGAACTCTCCGCTg > 1:15083354‑M2/44‑68 (MQ=255) gggCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTg > 1:7090203/1‑68 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:16486592/67‑1 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:2659414/1‑68 (MQ=255) actacgccattgaaaaagattgtgattgtcggcggcggtgcGACGGGTCTAGAACTCTCCGCTGAAtt > 1:31794984‑M2/42‑68 (MQ=255) actacgccattgaaaaagattgtgattgtcggcggcggcGCGCCTGGTGTAGAAATCTCCGCagaagt > 1:19107887‑M2/40‑66 (MQ=255) actacgccattgaaaaagattgcgattgtcggcggcggcGCGACggg < 1:27891032‑M2/8‑1 (MQ=255) tacgccattgaaaaagattgtgattgtcggcggcgggGCGGCTGGGGTTGAACTCTCCGCTGAGTTg > 1:20151123‑M2/38‑67 (MQ=255) gAAGGGAAAACTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGc < 1:10598815/68‑1 (MQ=255) gccattgaaaaagattgtgattgtcggcggcggaGCGGCGGGTGTAGAAATCTCCGCTCAAATGcaca > 1:11387371‑M2/35‑68 (MQ=255) cAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAc < 1:6180523/67‑1 (MQ=255) aaaagattgtgattgtcggcggcggcGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGCTc > 1:12738858‑M2/27‑68 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:24122561/67‑1 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:12875543/67‑1 (MQ=255) aaCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTGaa > 1:23850957/1‑68 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa < 1:5586852/67‑1 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:3288121/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:7868873/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:20657569/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAg < 1:16003136/68‑1 (MQ=255) cATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGc > 1:34252712/1‑68 (MQ=255) attgtgattgtcggcggcgggGCGACGGGGGTAGAACTCGCCGCTGAATTGCGCCACGCGGTCAAGc > 1:1896624‑M2/22‑67 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:29843535/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:8631208/1‑68 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:4794854/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:22928296/67‑1 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:26442315/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:12149589/1‑67 (MQ=255) tgtgATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:33489092/4‑66 (MQ=255) tgtgATTGTCGGCGGCGGAGCGCCGGGGGTAGAACTCTCCGCTGAAATGCACCAAACGGTCAGACAAc > 1:13013691/4‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:27373340/1‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:24970161/1‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:6606072/1‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:6694543/68‑1 (MQ=255) ttGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGca < 1:34738929/67‑1 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:30413121/68‑1 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:29446922/1‑68 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:4311065/1‑68 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:19729634/1‑68 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGGCAAGCAACTGcaca < 1:9612074/68‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:10246280/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:3182095/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:10288260/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:17979111/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:21515784/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:27566854/67‑1 (MQ=255) ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGTTCAAGCAACTGCACATCTACg < 1:31491304/67‑1 (MQ=255) ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:26077295/67‑1 (MQ=255) ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:20307548/67‑1 (MQ=255) gcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAGCTGCACAGCTACGGt > 1:12601699/1‑68 (MQ=255) gcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:23558783/1‑68 (MQ=255) gcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:23278227/1‑68 (MQ=255) gcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:30446728/1‑68 (MQ=255) cggctCTACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:25367561/67‑1 (MQ=255) cggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCTGTCAAGCAACTGCACAGCTACGGt < 1:12314323/67‑1 (MQ=255) cggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:8521303/67‑1 (MQ=255) cggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:32654562/67‑1 (MQ=255) ggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:25313788/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:28389376/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:29087323/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:11494598/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACa > 1:5004316/1‑68 (MQ=255) | CCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA > CP009273/1162014‑1162144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |