| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1282050 = | NA (NA) | 9 (0.020) | 4/98 | NT | NA | noncoding (1/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 1282075 = | NA (NA) | noncoding (26/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 540 total aligned reads displayed.
TTGCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1282123‑1282050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACA > CP009273/1282075‑1282141 TTGCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCA < 1:2212384/68‑1TTGCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCA < 1:31291687/68‑1TTGCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCA < 1:17479930/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:23718092/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:1665334/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:8871852/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:6828540/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:33042381/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:2611705/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:1454824/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:31911963/68‑1 GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATC < 1:7472787/68‑1 cctGATGGTACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCC > 1:11515237/4‑68 CCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCC > 1:19182640/1‑68 CCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCC > 1:30552143/1‑68 CCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCC > 1:28506867/1‑68 CCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCC > 1:20013662/1‑68 CCCGATGGCACCACGTTTACCGGGCATACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCC > 1:15474373/1‑68 CCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCG < 1:4127074/68‑1 CCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCG < 1:28821673/68‑1 CCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCC < 1:4735398/67‑1 GATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGAC < 1:24984741/68‑1 TTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACCTACAGGGGAGG < 1:18635047/67‑1 TTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACCTACAGGGGAGG < 1:1098068/67‑1 TACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACCTACAGGGGAGGAT < 1:2687539/68‑1 ATCCGACCTACAGGGGAGTATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:16840434/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:71752/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:5343370/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:4373174/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:24422598/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:25344573/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:4053167/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:32881688/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:8118867/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:8537840/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:28163674/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:7948540/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:30594479/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:29657871/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:17764673/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:11075756/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:14755717/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:21388561/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:13746223/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:13406682/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:1597044/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:13463878/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:17974643/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:16080494/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:19736213/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:12458205/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:12841535/68‑1 ATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGA < 1:934146/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTTCACGTGGTGCCAGCGGGCAAAATTAGCTCGGAG < 1:25136431/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGTAG < 1:27150046/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:13894727/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG < 1:13593839/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG < 1:9018491/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:32542950/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:13077182/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:33532125/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:33829351/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:34160517/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:3477319/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:6254530/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:10077490/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG < 1:10670042/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:3008308/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:21860747/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG < 1:22731751/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:23372826/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:21117146/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:24656701/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:24870269/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:20899040/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:20332307/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG < 1:26000767/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG < 1:19514345/68‑1 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:27272941/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:27725070/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:16949758/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:15759415/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAG > 1:14353891/1‑68 TCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATAGGGCAAAATTAGCTCGGAG > 1:10430281/1‑68 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT < 1:8232188/68‑1 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT > 1:9733072/1‑68 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT < 1:5466953/68‑1 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT < 1:30978812/68‑1 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT > 1:30724742/1‑68 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT < 1:29321723/68‑1 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT < 1:29210909/68‑1 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT > 1:26529760/1‑68 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT > 1:18332589/1‑68 CCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGT < 1:1214964/68‑1 CGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTA > 1:3570387/1‑68 CGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTA > 1:3222556/1‑68 GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAA < 1:33292407/68‑1 GACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTA > 1:2231025/1‑67 CCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACA > 1:6601706/1‑68 CCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACA > 1:25675356/1‑68 TTGCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1282123‑1282050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACA > CP009273/1282075‑1282141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |