| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1282050 = | NA (NA) | 9 (0.020) | 4/98 | NT | NA | noncoding (1/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 1282075 = | NA (NA) | noncoding (26/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 2447 total aligned reads displayed.
CTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAG > CP009273/1282009‑1282142 | cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:29753470/1‑68 (MQ=255)cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:23065108/1‑68 (MQ=255)cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:32737530/1‑68 (MQ=255)cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:20617599/1‑68 (MQ=255)cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:27238705/1‑68 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:15725046/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:25101691/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:12885701/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:27829425/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:27464441/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:3970660/67‑1 (MQ=255) tCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc > 1:5541405/1‑68 (MQ=255) cggcggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc < 1:26333100/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAggg > 1:4995035/1‑68 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAggg > 1:9754045/1‑68 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:4629334/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:22077969/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:9135385/67‑1 (MQ=255) ggggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggg < 1:17192742/68‑1 (MQ=255) ggggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggg < 1:17940018/68‑1 (MQ=255) ggggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggg < 1:31018222/68‑1 (MQ=255) ggggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggg < 1:34714546/68‑1 (MQ=255) gTTTTTTTATGGGCACGGTGCGGGGTGAGGTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggag < 1:10910689/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:30337458/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:24677461/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:33701582/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:21515309/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:11168767/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:23926945/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:23654122/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:13683773/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:16353772/67‑1 (MQ=255) gttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:26095294/66‑1 (MQ=255) ttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagga < 1:24490521/67‑1 (MQ=255) ttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGat < 1:24894636/68‑1 (MQ=255) ttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGat < 1:10001768/68‑1 (MQ=255) ttttttATCGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGat < 1:18620838/68‑1 (MQ=255) ttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGatat < 1:18288306/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:6060118/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:8640989/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:2692872/68‑1 (MQ=255) ttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTg > 1:202578/1‑68 (MQ=255) ttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTg > 1:19054689/1‑68 (MQ=255) tATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGt > 1:30719814/1‑68 (MQ=255) tATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATACGACCTACAGGGGAGGATATTGt > 1:7776638/1‑68 (MQ=255) gggCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAgg < 1:33954885/68‑1 (MQ=255) gCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGc < 1:25377662/67‑1 (MQ=255) aCGGTTCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:10365616/68‑1 (MQ=255) aCGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:26663631/68‑1 (MQ=255) aCGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:13438634/68‑1 (MQ=255) aCGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:28469436/68‑1 (MQ=255) aCGGGGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:24323599/68‑1 (MQ=255) aCGGGGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:33294335/68‑1 (MQ=255) cGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 1:10633276/68‑1 (MQ=255) cGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 1:29441440/68‑1 (MQ=255) tGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:9489187/40‑1 (MQ=255) gCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTaa > 1:22707588/1‑67 (MQ=255) gCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTaa > 1:11920595/1‑67 (MQ=255) ggggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAAc < 1:3627651/67‑1 (MQ=255) gggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTATGCCCGGTAAACgt > 1:5323836/1‑68 (MQ=255) gggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAAc < 1:14076494/66‑1 (MQ=255) gggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgt > 1:21830040/1‑68 (MQ=255) gggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgt > 1:32377008/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGCCCTACCGGGGAGGAGATTGTAGGCCCGGTAAACgtgg > 1:8926661/1‑68 (MQ=38) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:23331913/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:34438840/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:32021179/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:31601233/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:28746706/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:29207257/1‑68 (MQ=255) gAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtggt < 1:30042104/67‑1 (MQ=255) CGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCgg < 1:20006826‑M1/68‑1 (MQ=255) CGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCgg < 1:6824294‑M1/68‑1 (MQ=255) GGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTACcatcagg > 1:11515237‑M1/1‑65 (MQ=255) GATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGc < 1:31291920‑M1/68‑1 (MQ=255) GATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGc < 1:13126572‑M1/68‑1 (MQ=255) GATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGc < 1:16705429‑M1/68‑1 (MQ=255) gcgcTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCaaa > 1:14590222/1‑68 (MQ=255) gcgcTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCaaa > 1:1230420/1‑68 (MQ=255) gcttcgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAAt > 1:7103026/1‑68 (MQ=255) cgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGc < 1:33030994/68‑1 (MQ=255) cttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTc > 1:19746251/1‑68 (MQ=255) atccgacCTACATGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGa < 1:8112217‑M2/61‑1 (MQ=255) atccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGa < 1:14338583‑M2/61‑1 (MQ=255) atccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGa < 1:8345977‑M2/61‑1 (MQ=255) atccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGa < 1:15482114‑M2/61‑1 (MQ=255) atccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGa < 1:7418481‑M2/61‑1 (MQ=255) agccgacCTACCGGGGAGCATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGa < 1:17629928‑M2/61‑1 (MQ=255) tccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAg > 1:21167149‑M2/7‑68 (MQ=255) tccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAg > 1:16949758‑M2/7‑68 (MQ=255) tccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAg > 1:20907703‑M2/7‑68 (MQ=255) tccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAg < 1:19514345‑M2/62‑1 (MQ=255) tccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAg < 1:14969579‑M2/62‑1 (MQ=255) ccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGt < 1:4220514‑M2/63‑1 (MQ=255) ccgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGt < 1:1597586‑M2/63‑1 (MQ=255) cgacCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTa > 1:22422017‑M2/5‑68 (MQ=255) cCTACAGGGGAGGATATTGTAGTCCCGGTAAACTTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACa < 1:25698337‑M2/67‑1 (MQ=255) cCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACa > 1:6601706‑M2/2‑68 (MQ=255) cCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACa > 1:12625981‑M2/2‑68 (MQ=255) cCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACa > 1:28123220‑M2/2‑68 (MQ=255) | CTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAG > CP009273/1282009‑1282142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |