| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1282050 = | NA (NA) | 9 (0.020) | 4/98 | NT | NA | noncoding (1/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 1282075 = | NA (NA) | noncoding (26/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 3041 total aligned reads displayed.
GCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATC > CP009273/1281983‑1282117 | tgttactccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagg > 1:8659188‑M1/68‑68 (MQ=255)tgttactccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagg > 1:5355544‑M1/68‑68 (MQ=255)gCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTg > 1:17714615/1‑68 (MQ=255) ttactccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTc < 1:24457652‑M1/3‑1 (MQ=255) ttactccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTc < 1:32982041‑M1/3‑1 (MQ=255) gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATTGGCACGGTGCGGGGTGAGTTGt < 1:1644346/67‑1 (MQ=255) gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTg < 1:12023323/66‑1 (MQ=255) gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTc < 1:2466568/68‑1 (MQ=255) tactccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCg > 1:10669062‑M1/65‑68 (MQ=255) ctccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGa < 1:170513‑M1/6‑1 (MQ=255) ctccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGa > 1:27700682‑M1/63‑68 (MQ=255) tccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGAt < 1:2169531‑M1/7‑1 (MQ=255) tccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGAt < 1:27329268‑M1/7‑1 (MQ=255) tccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGAt < 1:16080494‑M1/7‑1 (MQ=255) tccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGAt < 1:24215432‑M1/7‑1 (MQ=255) tccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGAt < 1:13038359‑M1/7‑1 (MQ=255) ttAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGAt > 1:30016896/1‑67 (MQ=255) tAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATgc < 1:5079513/68‑1 (MQ=255) ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgct > 1:3241018/1‑68 (MQ=255) tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgct > 1:2295670/1‑67 (MQ=255) cacaTAGCCCCAGCCTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttc < 1:19914/68‑1 (MQ=255) cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttc < 1:20186627/68‑1 (MQ=255) cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttc < 1:11439089/68‑1 (MQ=255) cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttc < 1:10895959/68‑1 (MQ=255) cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttc < 1:24901194/68‑1 (MQ=255) caTCGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGACGGATGcgcttcgc < 1:13352931/68‑1 (MQ=255) aTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttcgct > 1:3335735/1‑68 (MQ=255) aTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGAAGcgcttcgca > 1:23250287/1‑67 (MQ=255) tAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttcgctt > 1:22318942/1‑68 (MQ=255) aGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTa < 1:265308/68‑1 (MQ=255) aGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTa < 1:14951736/68‑1 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTAt > 1:20530566/1‑67 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTAt > 1:34867151/1‑67 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:25423715/1‑68 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:19607134/1‑68 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:29328403/1‑68 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:15427076/1‑68 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc < 1:8951638/68‑1 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCCCATAGCTTATcc > 1:10381378/1‑68 (MQ=39) cccTGCGGCGGCGGGGTTTTTTTATGGGCACGGGGCGGGGGGAGTTGTCGGATGCGCTTCGCTTATcc < 1:13657366/68‑1 (MQ=38) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:12755901/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:6599853/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:3818255/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:25142694/1‑68 (MQ=255) cTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGa < 1:33615637/68‑1 (MQ=255) tGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGAc < 1:6214892/68‑1 (MQ=255) gCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATACGa > 1:715137/1‑66 (MQ=255) cTTCGGCGGGGTTTTTTTATGGGCACTGTGCGGGGTGAGTTGTCGGATGCGCTTCTCGTATCCGACCt > 1:29706226/1‑68 (MQ=255) cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:4368604/1‑68 (MQ=255) cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:23584602/1‑68 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:9144847/67‑1 (MQ=255) atcgtcgGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCTGATGCGCTTCGCTTATCCTACCt < 1:2109227/66‑1 (MQ=38) tCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc < 1:4082914/68‑1 (MQ=255) tCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc < 1:14012277/68‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAggg > 1:30726270/1‑68 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:11135744/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:32059582/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:31358036/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:32716546/67‑1 (MQ=255) ggggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggg < 1:28626263/68‑1 (MQ=255) gTTTTTTTATGGGCACGGTGCGGTGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggagg < 1:26829590/67‑4 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:7443381/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:7762099/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:25774827/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGGCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:34565832/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGGGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:3392984/67‑1 (MQ=255) tttttatATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:18748839/67‑1 (MQ=255) ttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGat < 1:23886479/68‑1 (MQ=255) ttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGat < 1:10001768/68‑1 (MQ=255) ttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGat < 1:29065888/68‑1 (MQ=255) ttttATGGGCACGGTGCGGGGGGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGatat < 1:15639580/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:2829671/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:5831318/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt > 1:9736598/1‑68 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:21944941/68‑1 (MQ=255) tATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGt > 1:8331741/1‑68 (MQ=255) tATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATACGACCTACAGGGGAGGATATTGt > 1:27975642/1‑68 (MQ=255) aCGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:16797357/68‑1 (MQ=255) aCGGTGCGGGGGGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:18377701/68‑1 (MQ=255) cGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 1:22630296/68‑1 (MQ=255) tGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:9489187/40‑1 (MQ=255) tGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTaa > 1:12450322/1‑68 (MQ=255) gCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTaa > 1:20824114/1‑67 (MQ=255) ggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtg > 1:31712608/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGTTATTGTAGGCCCGGTTAACgtgg > 1:8108822/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGc > 1:14655726/1‑55 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:15838657/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:21384519/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:19202580/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:18038818/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:26188271/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:27149944/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:34183846/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:685581/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:30281499/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:31072172/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:11763874/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:4772479/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtg < 1:14314200/67‑1 (MQ=255) tGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg < 1:17361735/67‑1 (MQ=255) | GCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATC > CP009273/1281983‑1282117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |