| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1397112 | 153 (0.370) | 11 (0.030) | 5/96 | NT | 5.1% | noncoding (1069/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 1397156 | 275 (0.770) | noncoding (1113/1195 nt) | IS5 | repeat region | |||||
CTCGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1397039‑1397112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccttTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTTAT < CP009273/1397156‑1397090 CTCGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGC < 1:15091594/68‑1CTCGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGC < 1:31079018/68‑1 CGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG < 1:29763520/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:21884969/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:27912315/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:13355770/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:33482729/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:14885265/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG > 1:29802332/1‑67 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG > 1:20449467/1‑67 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG > 1:28027365/1‑67 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG > 1:17849807/1‑67 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG > 1:5932326/1‑67 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG > 1:33153735/1‑67 GAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCT > 1:16328582/1‑68 GAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCT > 1:18963516/1‑68 AACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCCCCGTGCCGCCTT > 1:34642765/1‑68 acgATGTACGTTTTACCCGATCAGCCTTCTTCGCCAGGACAACGATATAAGCGCACCGTGCCGCCTT < 1:24963382/64‑1 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCTGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:9982743/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCgt > 1:13203242/1‑65 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:18970067/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:33463203/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:4065122/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:4513283/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:27456767/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:2982084/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:7974039/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:29396489/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:2980130/1‑67 ACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTTGCCGCTGCAATAGC < 1:27857186/68‑1 CCAGGACAACCATAAAAGCGCCCCGTGCCGCCGTTGCCGCTGGAATAGCCGTGAAGAAATGGCGGGA > 1:12678506/1‑67 CCAGGACAACCATAAAAGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGGCAAGAAATGGCTGGA > 1:32880304/1‑67 AAAAGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAG < 1:21300778/68‑1 AAGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGC < 1:26271879/68‑1 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCG > 1:21493205/1‑68 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCG > 1:34040705/1‑68 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGGCAAGAAATGGCTGGAACAATATGGGCAAGGCG > 1:18425379/1‑68 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGGCAAGAAATGGCTGGAACAAAATGGGCAAGGCG > 1:2391088/1‑68 AGCGCACCGTGCCGCCTTTGCCGCGGCAATAGCCGTCAAGAAATGGGTGGAACAATAAGGGCAAGGCG > 1:9213271/1‑68 AGCGCACCGTGCCGCCTTTGCCGCGGCAATAGCCGTCAAGAAATGGCTGGAACAATAAGGGCAAGGCG > 1:10006179/1‑68 ACCGTGCCGCCTTTGCCGCTGCAATAGCCGGCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACG > 1:17050093/1‑68 GCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGC > 1:17934337/1‑67 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:21742301/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:4997281/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:11327372/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:13460673/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:22564405/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:30226839/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:7699385/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:5738189/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:17401409/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:33562645/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:18352734/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:19113136/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:5123474/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:34817825/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:27127075/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT > 1:19884331/1‑68 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:23829136/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGC < 1:7753854/67‑1 CGCCTTTGCCGCTGCAATAGCCGGCCAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:32468401/68‑1 CGCCTTTGCCGCTGCAATAGCCGGCAAGAAATGGCGGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:27922648/68‑1 CGCCTTTGCCGCCGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:10719984/68‑1 CGCCTTTGCCGATGAAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:1521591/68‑1 CGCCTTAGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:33898815/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAATAAATGGCTGGACCAATATGGGCAAGGCGGCACGGTGCGCTT < 1:21168149/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:10872187/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:34055008/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:9177300/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:8327123/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:20717798/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:17282932/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:13820605/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAA‑GCGGCACGGTGCGCTTT > 1:26759664/1‑68 CCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTT > 1:31688036/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT < 1:19508656/68‑1 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT < 1:13602625/68‑1 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:22826509/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:22966801/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTT < 1:7880272/67‑1 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTT < 1:17036955/67‑1 CTTTGCAGCTGCAATAGCCGTCTAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTT < 1:28265811/67‑1 TTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTTAT < 1:27137026/68‑1 TTGCCGCGGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTTAT < 1:15836882/68‑1 CTCGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1397039‑1397112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccttTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTTAT < CP009273/1397156‑1397090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |