| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1397112 | 153 (0.370) | 11 (0.030) | 5/96 | NT | 5.1% | noncoding (1069/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 1397156 | 275 (0.770) | noncoding (1113/1195 nt) | IS5 | repeat region | |||||
Only 100 of 376 total aligned reads displayed.
AACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATT > CP009273/1397045‑1397179 | aaCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCCCCGTGCCGCCTT > 1:34642765‑M1/1‑68 (MQ=255) aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:7211262/68‑1 (MQ=255) aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:1652973/68‑1 (MQ=255) aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:2536303/68‑1 (MQ=255) aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:3319689/68‑1 (MQ=255) aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:33327072/68‑1 (MQ=255) aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:2982084‑M1/1‑67 (MQ=255) aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:4513283‑M1/1‑67 (MQ=255) ccATGAACGTTTTACGCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGc < 1:33546240/68‑1 (MQ=255) ccATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCATCGTGCCGCCTTGc < 1:25167041/68‑1 (MQ=255) ccATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGc < 1:12943108/68‑1 (MQ=255) ccATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGc < 1:19249887/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:18815174/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:18607607/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:29602121/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:17884411/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:17657031/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:27546729/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:4543331/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:13477421/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:5665610/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:5800895/68‑1 (MQ=255) gAACGTTTTACCCGAGCCTCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:30613928/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:10906491/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:29216244/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:31473189/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:6072374/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:31138654/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:25621363/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:12396046/68‑1 (MQ=255) aaCGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCata > 1:27177626/1‑68 (MQ=255) cGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCGCATAtt > 1:27835740/1‑68 (MQ=255) cGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATAtt > 1:31887367/1‑68 (MQ=255) cGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATAtt > 1:11581704/1‑68 (MQ=255) cGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATAtt > 1:11302606/1‑68 (MQ=255) tttAGCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGt < 1:16101569/67‑1 (MQ=255) tttACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGt < 1:30066888/67‑1 (MQ=255) tttACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGt < 1:22605287/67‑1 (MQ=255) cccGAGCCGCCTTCTTCGCCAGGACACCCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCa > 1:14855887/1‑67 (MQ=255) cccGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCatat > 1:23235421/1‑60 (MQ=255) cccGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAg < 1:10257999/68‑1 (MQ=255) cGAGTCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGcc < 1:23813569/68‑1 (MQ=255) cgccTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCAtt < 1:22268168/66‑1 (MQ=255) cgccTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCAtt < 1:13736259/66‑1 (MQ=255) cgccTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCAtt < 1:16825380/66‑1 (MQ=255) cgccTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCAtt < 1:7532215/66‑1 (MQ=255) gccTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCt < 1:18990402/68‑1 (MQ=255) ttcttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTg > 1:30157679/1‑67 (MQ=255) ttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACgg < 1:21571348/68‑1 (MQ=255) ttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACgg < 1:30391699/68‑1 (MQ=255) ttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACgg < 1:3786061/68‑1 (MQ=255) cGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCt < 1:20389085/68‑1 (MQ=255) aCAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCa > 1:13383621/1‑67 (MQ=255) cAACCATAAAAGCGCACCGTGCCGCCTTGCCCGTAATGTTCCAGCCATTTCTTGACGGCTATTGCAGc > 1:21097974/1‑68 (MQ=255) aaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaag < 1:7880272‑M2/67‑4 (MQ=255) aaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggc < 1:13820605‑M2/68‑6 (MQ=255) aaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggc < 1:8327123‑M2/68‑6 (MQ=255) aGCGCACCGTGCCGCCTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcg > 1:34040705‑M1/1‑18 (MQ=255) aGCGCACCGTGCCGCCTTtgccgcggcaatagccgtcaagaaatggctggaacaataagggcaaggcg > 1:10006179‑M1/1‑18 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCGGCGGCAaaggcg < 1:10719984‑M2/68‑7 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg < 1:4997281‑M2/68‑7 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTGGCCGGCTATTGCAGCGGCAaaggcg < 1:32468401‑M2/68‑7 (MQ=255) gcACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGgcggcg > 1:33890862/1‑68 (MQ=255) aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt < 1:8219817/68‑1 (MQ=255) aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt > 1:234728/1‑68 (MQ=255) aCCGTGCCGCCTTGCCCATATTGTTCCAGCCAGTTCTTGACGGCTATTTCAGCGGCAAAGGCGGCGGt > 1:34288120/1‑68 (MQ=255) cGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGCCGGCTATTGCAGCGGCAaaggcggcacggt > 1:17050093‑M2/1‑55 (MQ=255) cGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTc < 1:18006655/68‑1 (MQ=255) cGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTc < 1:24431746/68‑1 (MQ=255) gTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTc > 1:14521559/1‑67 (MQ=255) gccgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTccc < 1:33082019/67‑1 (MQ=255) gccgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCa > 1:212463/1‑68 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:5123474‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:22564405‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:17401409‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:18352734‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct > 1:19884331‑M1/1‑6 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:27127075‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgc < 1:7753854‑M1/67‑62 (MQ=255) cgccTTtgccgatgaaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:1521591‑M1/68‑63 (MQ=255) cgccTTGCCCATTTTGTTCCAGCCATTTCTTGCCGGCTATTGCAGCGGCAaaggcggcacggtgcgct > 1:2391088‑M2/1‑50 (MQ=255) cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGCTCCCAg < 1:8726228/67‑1 (MQ=255) gccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgctt < 1:9177300‑M1/68‑64 (MQ=255) gccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaagcggcacggtgcgcttt > 1:26759664‑M1/1‑5 (MQ=255) gccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcggcacggtgcgctt < 1:26271879‑M2/68‑20 (MQ=255) gccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCa > 1:24636867/1‑68 (MQ=255) ccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgcttt > 1:31688036‑M1/1‑4 (MQ=255) ccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaa > 1:3409498/1‑68 (MQ=255) cTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgctttt < 1:13602625‑M1/68‑66 (MQ=255) cTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgctttt < 1:19508656‑M1/68‑66 (MQ=255) cTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgctttt > 1:22826509‑M1/1‑3 (MQ=255) cTTtgcagctgcaatagccgtctagaaatggctggaacaatatgggcaaggcggcacggtgcgcttt < 1:28265811‑M1/67‑65 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:13130077/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:6652241/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:14043185/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:15932162/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:27913867/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:21450552/1‑68 (MQ=255) cTTGCCCATATTGTTCCACCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:9434983/1‑68 (MQ=255) ttgccgcggcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgcttttat < 1:15836882‑M1/68‑68 (MQ=255) | AACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATT > CP009273/1397045‑1397179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |