New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1397112153 (0.370)11 (0.030) 5/96 NT 5.1% noncoding (1069/1195 nt) IS5 repeat region
?CP009273 = 1397156 275 (0.770)noncoding (1113/1195 nt) IS5 repeat region

Only 100 of 447 total aligned reads displayed.

CATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATG  >  CP009273/1397089‑1397220
                                                                   |                                                                
    aaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaagg                                                              >  1:31688036‑M2/1‑64 (MQ=255)
    aaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaag                                                               <  1:17036955‑M2/67‑4 (MQ=255)
     aaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggc                                                             <  1:10872187‑M2/68‑6 (MQ=255)
     aaGCGCACCGTGCCGCCTTGCCCATATTGGTCCAGCCATTTATTGACGGCTATTGCAGCGGCAaaggc                                                             <  1:21168149‑M2/68‑6 (MQ=255)
      aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCTaaggcg                                                            <  1:33898815‑M2/68‑7 (MQ=255)
      aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            <  1:11327372‑M2/68‑7 (MQ=255)
      aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            <  1:17401409‑M2/68‑7 (MQ=255)
      aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            <  1:5738189‑M2/68‑7 (MQ=255)
       gcgcACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            <  1:7753854‑M2/67‑7 (MQ=255)
           aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt                                                       <  1:8219817/68‑1 (MQ=255)
                gccgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTccc                                                   <  1:33082019/67‑1 (MQ=255)
                gccgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTccc                                                   <  1:5151081/67‑1 (MQ=255)
                  cgccTTGCCCTTATTGTTCCAGCCATTTCTTGACGGCTATTGCCGCGGCAaaggcggcacggtgcgct                                                >  1:10006179‑M2/1‑50 (MQ=255)
                  cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAg                                                 <  1:3538488/67‑1 (MQ=255)
                  cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAg                                                 <  1:597683/67‑1 (MQ=255)
                  cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGc                                                <  1:27634840/68‑1 (MQ=255)
                   gccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCa                                               <  1:33209730/68‑1 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:4967074/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             <  1:14173519/68‑1 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:15932162/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:1308592/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCACCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:9434983/1‑68 (MQ=255)
                          ccttatTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATtgt                                         <  1:21580689/64‑1 (MQ=255)
                          ccATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATtgtg                                        >  1:22769273/1‑68 (MQ=255)
                          ccATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATtgtg                                        >  1:14972940/1‑68 (MQ=255)
                          ccATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATtgt                                         <  1:24335001/67‑1 (MQ=255)
                           cATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTgtgt                                       <  1:20586556/68‑1 (MQ=255)
                             tatTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTcc                                     <  1:32617251/68‑1 (MQ=255)
                              atTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTcc                                     >  1:34805250/1‑67 (MQ=255)
                              atTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTcc                                     >  1:12189387/1‑67 (MQ=255)
                              atTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTcc                                     >  1:27197574/1‑67 (MQ=255)
                               ttGTTCCAGCCATTTCTTGCCGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:23074254/1‑68 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGCCGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:21771823/1‑68 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:20090985/1‑68 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:18184550/1‑68 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:34406000/1‑68 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:3695142/1‑68 (MQ=255)
                                tGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCa                                  >  1:33612133/1‑68 (MQ=255)
                                 gTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCaa                                 <  1:24003952/68‑1 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCGGCAAATTGTGTCCGCAAcc                               >  1:23672025/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:30123946/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:32279860/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:26671035/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTCACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:7962953/1‑68 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:1045054/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:28090122/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:25917022/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:1109033/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:13699581/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:16386242/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:24543574/1‑67 (MQ=255)
                                          atatCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCa                        <  1:25392028/65‑1 (MQ=255)
                                          aTTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCa                        <  1:8906671/68‑1 (MQ=255)
                                          aTTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCa                        <  1:6157200/68‑1 (MQ=255)
                                          aTTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGCTCCCAGCAAATTGTGTCCGCAACCGTGACCa                        <  1:25254846/68‑1 (MQ=255)
                                           tttCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAt                       <  1:17238576/68‑1 (MQ=255)
                                            ttCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAtt                      <  1:34254653/68‑1 (MQ=255)
                                             tCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAttt                     >  1:9279987/1‑68 (MQ=255)
                                              cTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAttt                     >  1:14424178/1‑67 (MQ=255)
                                                 gACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCa                  >  1:24786168/1‑67 (MQ=255)
                                                  aCGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCAcc                >  1:30487057/1‑68 (MQ=255)
                                                  aCGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCAcc                >  1:11887120/1‑68 (MQ=255)
                                                   cGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCg               >  1:28411595/1‑68 (MQ=255)
                                                    ggCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCgg              >  1:8650132/1‑68 (MQ=255)
                                                     gCTATTGCAGCGGCAaaggcggcacggtgcgcttttatggttgtcctggcgaagaaggcggctcgggt             <  1:27857186‑M2/68‑54 (MQ=255)
                                                     gCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCgg              >  1:23342243/1‑67 (MQ=255)
                                                     gCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCgg              >  1:7061894/1‑67 (MQ=255)
                                                      cTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCggg             <  1:2140352/67‑1 (MQ=255)
                                                       tATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCg           <  1:4222147/68‑1 (MQ=255)
                                                         ttGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTc         <  1:1396101/68‑1 (MQ=255)
                                                         ttGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTc         <  1:7447513/68‑1 (MQ=255)
                                                         ttGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTc         <  1:29698932/68‑1 (MQ=255)
                                                          tGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTc         >  1:15819813/1‑67 (MQ=255)
                                                            cAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACg      >  1:22526470/1‑68 (MQ=255)
                                                             aGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACgg     >  1:29090757/1‑68 (MQ=255)
                                                             aGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACg      <  1:17986228/67‑1 (MQ=255)
                                                             aGCGGCAAAGGCGGCGCTTCCCAGCAAATTGTGTCCGCAACCGTCACCATTTTCACCGGGCGTCACgg     >  1:5350809/1‑68 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:8406741/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:13412683/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:25039117/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:31620030/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:31308206/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:19709645/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:30578409/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:2695733/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:14791253/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:19346901/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:1870400/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:15198855/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:482513/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:4604472/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:4039837/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:15456719/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:26320572/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:16756737/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:28924211/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:34084277/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:18399748/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATg  <  1:7212749/68‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATg  <  1:20936129/68‑1 (MQ=255)
                                                                   |                                                                
CATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATG  >  CP009273/1397089‑1397220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.