| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2230106 = | 273 (0.650) | 17 (0.050) | 7/92 | NT | 8.5% | noncoding (94/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2230138 = | 144 (0.420) | noncoding (126/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
Only 100 of 240 total aligned reads displayed.
ATCATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2230182‑2230106‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGA > CP009273/2230138‑2230203 TCATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAAT > 1:26251802/1‑67 TCATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAAT > 1:11101759/1‑67 TCATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAAT > 1:5005129/1‑67 TCATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAAT > 1:15673431/1‑67 TCATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAGGAGCCAAAT > 1:2168513/1‑67 CATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGC < 1:4760500/68‑1 CATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGC < 1:14317845/68‑1 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:10107236/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:28305048/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:31867736/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:23393013/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:33791118/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:15645593/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:13600910/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:10299176/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCAACAGGAGCCAAATGCC > 1:16904140/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGACGCATCCGGCAACAGGAGCCAAATGCC > 1:34173919/1‑68 ATGATCTGTGTGGTTTTGTAGGCCGCATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCC > 1:17508891/1‑68 GATCTGTGTGGTTTTGTATGCCGGATAAGGACTTCACGCCGCATCCTGCAACAGGAGCCAAATGCCGG > 1:11984435/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:20265088/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:19369493/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:4631401/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:20489437/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:20893130/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:20959751/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:22836983/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:7227739/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:9514817/1‑68 GATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGG > 1:30318159/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:11584725/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:22106786/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:10723658/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:29735947/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:28492380/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:27805182/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:34581416/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:13706823/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:1427170/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:13322948/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:15255275/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:12893207/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:34288956/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:19068441/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:12433478/1‑68 ATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGA > 1:5301994/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:31714043/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:10170167/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT < 1:9042868/68‑1 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:28852035/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:33949102/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT < 1:30742366/68‑1 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT < 1:8027683/68‑1 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:32265696/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:7456826/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:6766240/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:33290313/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:6435291/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:6381227/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:19934788/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT < 1:10907038/68‑1 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:12377025/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:15848872/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:15886218/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:16080056/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:16506875/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:16546076/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:17832602/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:26978675/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:20317615/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:21279990/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT < 1:22548975/68‑1 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:23671792/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:2369154/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT < 1:26429480/68‑1 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:25730776/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT > 1:24848384/1‑68 TCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGAAACAGGAGCCAAATGCCGGAT > 1:31084972/1‑68 TCTGTGTGGTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGAT < 1:27061619/68‑1 TGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGC > 1:3735899/1‑68 GTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGCGG < 1:23532327/67‑1 GTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGCGG < 1:4924574/67‑1 TGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGACAGGAACCAAATGCCGGATGCGGCTTGAACG < 1:12855639/68‑1 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGCGGCGTGAACGC < 1:34334040/68‑1 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGCGGCGTGAACGC < 1:7660283/68‑1 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGCGGCGTGAACGC < 1:23918799/68‑1 CGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA > 1:32830170/1‑68 CGCCGCATCCGGCAACAGGCGCCAAATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACC > 1:17029409/1‑67 CAACAGGAGCCAAATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGA > 1:16985964/1‑68 ACAGGAGCCAAATGCCGGATGCGGGGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATG > 1:24924486/1‑68 ACAGGAGCCAAATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATG > 1:19431492/1‑68 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTA > 1:31621520/1‑68 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAT > 1:30696539/1‑68 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAT > 1:26604412/1‑68 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATTATGTTATGTGCGTTTATGA < 1:23997593/68‑1 GGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGA < 1:19192709/68‑1 GATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGA > 1:88631/1‑67 GATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGA > 1:9249519/1‑67 ATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGAC < 1:21153262/67‑1 ATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGAC < 1:28038171/67‑1 GCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGA > 1:8338608/1‑68 ATCATGATCTGTGTGGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACAGGAGCCAAATGCCGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2230182‑2230106‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGA > CP009273/2230138‑2230203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |