| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2230106 = | 273 (0.650) | 17 (0.050) | 7/92 | NT | 8.5% | noncoding (94/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2230138 = | 144 (0.420) | noncoding (126/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
Only 100 of 654 total aligned reads displayed.
GAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAAT > CP009273/2230070‑2230205 | gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:29307383/1‑67 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:31598480/1‑67 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:32069914/1‑67 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:10427428/1‑68 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:27627345/1‑68 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:3882260/1‑68 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:3630613/1‑68 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcgg < 1:9712433/66‑1 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:152684/68‑1 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:18478530/68‑1 (MQ=255) tgtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGa > 1:13379298‑M2/15‑67 (MQ=255) tgtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGa > 1:432532‑M2/15‑67 (MQ=255) gtaggccggataaAACGCGCCAGCGTTGCTTCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:12519285‑M2/14‑68 (MQ=255) gtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:20825114‑M2/14‑68 (MQ=255) gtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:25480588‑M2/14‑68 (MQ=255) gtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:6681868‑M2/14‑68 (MQ=255) gtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:34537596‑M2/14‑68 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:28287345‑M2/56‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg > 1:17684233‑M2/12‑67 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:34681865‑M2/56‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:30843867‑M2/57‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:24486145‑M2/57‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:32848855‑M2/57‑1 (MQ=255) ggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg > 1:9283425‑M2/11‑66 (MQ=255) ggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg > 1:20053904‑M2/11‑66 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:19639585‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:30444919‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:14937617‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:26277640‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:769233‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:7345243‑M2/10‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:30233513‑M2/9‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGCCTCCTGTTGCCGGATGCGGCGTGATCGCCtt > 1:10030371‑M2/9‑68 (MQ=255) cggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTa < 1:27859152‑M2/61‑1 (MQ=255) cggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTa < 1:26509609‑M2/61‑1 (MQ=255) aaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCgg < 1:18848808‑M2/66‑1 (MQ=255) aaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCgg < 1:11432232‑M2/66‑1 (MQ=255) aaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCgg < 1:13858217‑M2/66‑1 (MQ=255) aAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:12689674‑M2/67‑1 (MQ=255) aAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:12262757‑M2/67‑1 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGCACGCCTTATCCGGCCt > 1:28816746/1‑68 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:21159514/68‑1 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:22222474/1‑68 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:8668904/68‑1 (MQ=255) cgcgCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:9049800/1‑67 (MQ=255) gcgttcacgccGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATACGGCCTAc < 1:20952815‑M1/57‑1 (MQ=255) cgttcaagccGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa < 1:12855639‑M1/58‑1 (MQ=255) gcCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaa < 1:3412190/68‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:33748409/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:32493264/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:16384264/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:5688176/67‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAc < 1:31798038/65‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAc < 1:22548401/65‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:14420738/68‑1 (MQ=255) ccGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:4924574‑M1/65‑1 (MQ=255) tGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcacac > 1:33313486/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAACCACACAGa < 1:27061619‑M1/68‑1 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:34306373‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:24889224‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:4745254‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:6766240‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:26639284‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:26046635‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:15848872‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:16080056‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:23671792‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:16824088‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:14135674‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:29735947‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:16514417‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:11096267‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:22836983‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc < 1:20307760‑M1/68‑1 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:28480456‑M1/1‑68 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:15645593‑M1/1‑68 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:13600910‑M1/1‑68 (MQ=255) GGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCat > 1:8070120‑M1/1‑68 (MQ=255) GCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCatg < 1:11779323‑M1/68‑1 (MQ=255) ATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCatga > 1:6189235‑M1/1‑67 (MQ=255) tttGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCatgatg < 1:21322747/68‑1 (MQ=255) tttGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCatgatg < 1:23512090/68‑1 (MQ=255) tttGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCatgatg < 1:31058999/68‑1 (MQ=255) gCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTAt > 1:10261304/1‑68 (MQ=255) tCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTAtgt < 1:13030049/68‑1 (MQ=255) tCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTAtgt > 1:23175533/1‑68 (MQ=255) cTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGc < 1:2186848/68‑1 (MQ=255) gTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGt < 1:3386243/68‑1 (MQ=255) gTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGt < 1:5074858/68‑1 (MQ=255) ccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAGCCCCACAGCTCATGATGTTATGTGCGTTTAt > 1:17455569‑M2/9‑68 (MQ=255) ccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAt > 1:26874360‑M2/9‑68 (MQ=255) ccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAt > 1:17007515‑M2/9‑68 (MQ=255) ccggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAt > 1:30696539‑M2/9‑68 (MQ=255) ggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATTATGTTATGTGCGTTTATGa < 1:23997593‑M2/62‑1 (MQ=255) ggatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGa < 1:19192709‑M2/62‑1 (MQ=255) gatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGa > 1:19375122‑M2/6‑67 (MQ=255) gatgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGa > 1:23884024‑M2/6‑67 (MQ=255) atgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGAcc > 1:7514682‑M2/5‑68 (MQ=255) tgcGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCg < 1:10787059‑M2/65‑1 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAAt < 1:18004462/68‑1 (MQ=255) | GAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAAT > CP009273/2230070‑2230205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |