| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2230106 = | 273 (0.650) | 17 (0.050) | 7/92 | NT | 8.5% | noncoding (94/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2230138 = | 144 (0.420) | noncoding (126/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
Only 100 of 582 total aligned reads displayed.
GGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACA > CP009273/2230040‑2230173 | tcggtcataaacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccgc > 1:8338608‑M1/67‑68 (MQ=255)GGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGc > 1:22185454‑M1/1‑68 (MQ=255) CCTACAAAACCATACAAATCAGTATTTTGAGATTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCa > 1:29015843‑M1/1‑67 (MQ=255) gtcataaacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCAt < 1:33650851‑M1/4‑1 (MQ=255) cataaacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCg > 1:6866701‑M1/62‑68 (MQ=255) cataaacgcacataacatcatgatctgtgtgggtttgtaggccggataaggcgttcacgccGCATCCg > 1:9565220‑M1/62‑68 (MQ=255) ACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCg < 1:31898656‑M1/68‑1 (MQ=255) taaacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCGGc > 1:31735888‑M1/60‑68 (MQ=255) AAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGc < 1:14586211‑M1/68‑1 (MQ=255) AAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCATTGCATCCGGc < 1:32275480‑M1/68‑1 (MQ=255) AAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCa < 1:14963810‑M1/68‑1 (MQ=255) aacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCGGCa < 1:4863941‑M1/10‑1 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:20110140/1‑68 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:18241094/1‑68 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:33376317/1‑68 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:34488531/1‑68 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:11770065/1‑68 (MQ=255) cATACAAATCAGTATGTTGAGCTTATTGTTGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTg < 1:2777511/68‑1 (MQ=255) cATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTg > 1:31321975/1‑68 (MQ=255) cATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTg > 1:29353759/1‑68 (MQ=255) aCAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGc > 1:16696096/1‑67 (MQ=255) aCAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGc > 1:17981232/1‑67 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:14309076/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:9352516/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:10255549/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:21897327/1‑68 (MQ=255) gTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTg > 1:2240611/1‑67 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTg < 1:14004426/65‑1 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGc < 1:25439508/66‑1 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGc < 1:15750849/66‑1 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg > 1:32735867/1‑68 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg > 1:4125134/1‑68 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg > 1:12230483/1‑68 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg > 1:6010787/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:10490336/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:21077248/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:19443549/1‑68 (MQ=255) tGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGAt > 1:19993976/1‑67 (MQ=255) tGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGAt > 1:25668361/1‑67 (MQ=255) tGAGCTTATTGTACGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGAt < 1:29911946/67‑1 (MQ=255) gAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgc > 1:33185718/1‑68 (MQ=255) gAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgc > 1:727409/1‑68 (MQ=255) caGCTTATTGTAGGCCGGAT‑AAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:25147830/2‑68 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:800986/1‑67 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:3882260/1‑68 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:13404178/1‑68 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcaac < 1:17096034/67‑4 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcaac < 1:26207506/67‑4 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:152684/68‑1 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:18602133/68‑1 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:16880753/68‑1 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:28667744/68‑1 (MQ=255) tgtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGa > 1:34011813‑M2/15‑67 (MQ=255) gtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:22769348‑M2/14‑68 (MQ=255) gtaggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:1253034‑M2/14‑68 (MQ=255) tgtaggccggataaggcgttcacgccGCATCCGGc > 1:26460818‑M1/27‑35 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTTAACGc < 1:18832461‑M2/57‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGCACg > 1:11497755‑M2/12‑67 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:34681865‑M2/56‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:28287345‑M2/56‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:26945221‑M2/56‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:8803660‑M2/57‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:30670329‑M2/57‑1 (MQ=255) aggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:30843867‑M2/57‑1 (MQ=255) ggccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg > 1:11224400‑M2/11‑66 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:16059054‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:12693954‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:17500542‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:24317945‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:26620184‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:5514723‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:19639585‑M2/10‑68 (MQ=255) gccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:19270431‑M2/10‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGCTGCGGCGTGAACGCCtt > 1:20549048‑M2/9‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGACCGCCtt > 1:30416574‑M2/9‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGcc < 1:3648357‑M2/58‑1 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:13024930‑M2/9‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:1790677‑M2/9‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:2763546‑M2/9‑68 (MQ=255) ccggataaAACGCGCCAGCGTTGCATCCGGCATTTGCCTCCTGTTGCCGGATGCGGCGTGATCGCCtt > 1:10030371‑M2/9‑68 (MQ=255) cggataaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTa < 1:5688315‑M2/61‑1 (MQ=255) taaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCg > 1:28517647‑M2/4‑68 (MQ=255) aaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCgg < 1:19158878‑M2/66‑1 (MQ=255) aaAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCg > 1:23112771‑M2/3‑67 (MQ=255) aAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:34095424‑M2/67‑1 (MQ=255) aAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:23932488‑M2/67‑1 (MQ=255) aAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:7617528‑M2/67‑1 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:20897160/68‑1 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:27170019/1‑68 (MQ=255) cgcgCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:9049800/1‑67 (MQ=255) cgcgCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:4426256/1‑67 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:16384264/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:6591084/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:23740600/67‑1 (MQ=255) cGTTCCATCCGGCATTTGGCTCCTGTTGCCGGATCCGGCCTGAACGCCTTATCCGGCCTACAAAAcc > 1:26808788/1‑67 (MQ=14) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAcc < 1:9790090/66‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:13822864/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:24672852/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:21310168/68‑1 (MQ=255) ccGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:23532327‑M1/65‑1 (MQ=255) | GGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACA > CP009273/2230040‑2230173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |