New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2540715218 (0.520)15 (0.040) 4/94 NT 5.9% coding (684/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system
?CP009273 = 2540730 297 (0.850)coding (699/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system

Only 100 of 197 total aligned reads displayed.

TAACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540640‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664
                                                                                                                                               
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCG                                                                            <  1:9752133/68‑1
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:29718437/1‑67
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:4933233/1‑67
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:23599283/1‑67
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:29663168/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:19410245/1‑68
   CCCCGCAGCTACCACCGGTTACTACGCCGGTTTTCACTATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:24898692/68‑1
   CCCCGCAGCGACCTCCGGTTACTACGGCGGTTTTCACGATTTCTTTGGTCTGCCGATCGATCCGCGCG                                                                          >  1:32754353/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCCCGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:17783178/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGTTTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31368241/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGCTCCGCGCG                                                                          >  1:3593668/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:26908234/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:22369343/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:29363135/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:29348944/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:27750641/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:2311704/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:26691803/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:24429626/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:24086529/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:9855074/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:22864630/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:23207515/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:3026887/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:30650198/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:30906009/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31075538/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31685898/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:33169595/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:33267019/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:34256882/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:34537865/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:3472931/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:4741891/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:5294750/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:5767335/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:6395998/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:7134412/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:800541/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1289085/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14906875/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:15193726/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14479795/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:16969234/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:17130519/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14275645/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18798102/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1379397/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13535127/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1334613/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:19325902/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:12447784/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1143598/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:20167572/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10336797/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:11069952/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21697863/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21358163/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21053944/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:20631317/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGAGTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:4103861/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCAAGATTACTTTGGTCAGCCCATCGATCCGCGCG                                                                          >  1:9461659/1‑68
    CCCGCAGCGACCACCGGGTACTACGCCGGTTTTCACGATTTCTTTGGGCTGCCCATCGATCCGCGCGG                                                                         <  1:1793985/68‑1
     aCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:25842434/67‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:23944414/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:2835101/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:10731350/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:29902954/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:17037394/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:8245876/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:11213917/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:26026553/68‑1
     CCGCAGCGACCACCGGTTACGACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:15953025/68‑1
       GCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAA                                                                      <  1:15360744/68‑1
         AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCAGCCCATCGATACCCGCGGCAAaa                                                                    >  1:2099455/1‑66
                                                TGGTCTGCCCATCGATCCGCGCGGGAATCAGCACGCGGATAATATTGCCGCGCGGATCGATGGGCAG                              >  1:23815661/1‑67
                                                TGGTCTGCCCATCGATCCGCGCGGCAATCAGCCCGCCGATAATATTGCCGCGCGGCTCGATGGGCAG                              >  1:21869483/1‑67
                                                   TCTGCCCATCGATCCGCGCGGCAATCCGCACGCCGATAATATTGCCGCGCGGATGGGTGGGCAGACCA                          >  1:25827144/1‑68
                                                   TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGGGGATCGATGGGCAGACCA                          >  1:17575383/1‑68
                                                   TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCA                          >  1:8421065/1‑68
                                                             GATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAATTCGT                >  1:26820545/1‑68
                                                             GATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGT                >  1:28860392/1‑68
                                                                    GCGGCAATCAGCCCGCCGATAATATTGCCGCGCGGATCGATGGGCAGACGAATGAAATCGTGAAAACC         >  1:356285/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGCCCAAAGAAATCGTGAAAACC         >  1:25451352/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:15860201/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         <  1:27452589/68‑1
                                                                      GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGCCCAAAGAAATCGTGAAAACCG        >  1:28651226/1‑67
                                                                      GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGG       <  1:22301894/68‑1
                                                                      GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        <  1:9699331/67‑1
                                                                        CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:13062702/67‑1
                                                                        CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:27231707/67‑1
                                                                        CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:21716193/67‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:10019159/68‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:1960305/68‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    >  1:29211485/1‑68
                                                                          ATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTA   >  1:20531066/1‑68
                                                                          ATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTA   >  1:2255561/1‑68
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:8774712/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:14065058/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAACAATTCGTGAAAAGCGGCGTAG  <  1:31880663/68‑1
                                                                                                                                               
TAACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540640‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.