| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2540715 | 218 (0.520) | 15 (0.040) | 4/94 | NT | 5.9% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 297 (0.850) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
Only 100 of 383 total aligned reads displayed.
AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 | aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:23925306/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:22875456/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:12197066/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:13315180/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGAGTTCTTTGGTCTGCCCATCGCTCCGCGCGGCAata > 1:31616470/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGGTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:1988840/1‑68 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat < 1:8971193/66‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat < 1:21389610/66‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat < 1:17657445/66‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:31239188/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:22473037/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:14128289/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:936152/65‑1 (MQ=255) gACCACCGGTAACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat < 1:15477616/66‑1 (MQ=255) accGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCgg < 1:6631254/68‑1 (MQ=255) ccGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGc > 1:14733750/1‑68 (MQ=255) cGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCg < 1:25982356/68‑1 (MQ=255) ggTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:24271961/1‑68 (MQ=255) ggTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt < 1:12043350/68‑1 (MQ=255) ggTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt < 1:28812958/68‑1 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:32916855/1‑65 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:24893720/67‑1 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:26230494/67‑1 (MQ=255) actacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTg > 1:20868264/1‑68 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:10019159‑M2/68‑4 (MQ=255) cGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:1340928‑M2/67‑4 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:27231707‑M2/67‑5 (MQ=255) cGGTTTTCACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc > 1:28651226‑M2/1‑61 (MQ=255) ggTTTTCACGATTTCATTCGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGGGCTGattgccgc > 1:356285‑M2/1‑60 (MQ=255) tCACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg < 1:7628387/68‑1 (MQ=255) cACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:32762109/68‑1 (MQ=255) cACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:28901620/68‑1 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatc > 1:23079356‑M2/1‑53 (MQ=255) aTTTCTTTGGTCTGCCCATCGATCCGCGCGTCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc > 1:8442912/1‑68 (MQ=255) aTTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc > 1:9662448/1‑68 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg < 1:23170419/68‑1 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg < 1:33674800/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:26406489/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:17921732/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:3188358/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:25210196/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATcagcccgccgataatattgccgcgcggctcgatgggcag > 1:21869483‑M1/1‑28 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:25581492/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:10007012/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:3461440/1‑68 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:15634304/1‑68 (MQ=255) tGGCCTGCCCATCGAGCCGCGCGGCAATATAACCGGCGGGCTGattgccgcgcggatcgatgggcaga > 1:25827575‑M2/1‑43 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAtt > 1:9833289/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATccgcgcgccgataatagtgccgcgcggatcgttgggctgacga > 1:17375389‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagccca > 1:23719175‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagacca > 1:8421065‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:34799912/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:16861964/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:6454358/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:7177070/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:28324793/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:27741362/1‑68 (MQ=255) cTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg < 1:9720329/67‑1 (MQ=255) cTGCCCATCGATCCGCGCGGCAATATTATCCGCGTGCTGattcccgcgcggatcgatgggcagacca > 1:23815661‑M2/1‑39 (MQ=255) tGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGaa < 1:22697338/68‑1 (MQ=255) tGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGaa < 1:1093965/68‑1 (MQ=255) tGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGaa < 1:26135760/68‑1 (MQ=255) tGCCCAGCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGaa < 1:28197516/68‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc > 1:11043412/1‑68 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc > 1:18782575/1‑68 (MQ=255) aTCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:29426407/68‑1 (MQ=255) gATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaattcgt > 1:26820545‑M1/1‑15 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:19329712/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:15812704/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt < 1:501741/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:6085757/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:8808263/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:26971343/1‑68 (MQ=255) gATCCGCGCCGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCGGCGCCCGCATTGAAGGCATGGt < 1:4166692/68‑1 (MQ=255) aTCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:25284502/1‑67 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTg < 1:14031145/67‑1 (MQ=255) ccGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:30309964/1‑67 (MQ=255) cgcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgcg > 1:5348840/1‑67 (MQ=255) gcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgcc > 1:30048696/1‑68 (MQ=255) gcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgcc < 1:15150395/68‑1 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagcccaaagaaatcgtgaaaacc > 1:25451352‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:10413267‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:10831729‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc < 1:27452589‑M1/68‑61 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:18117498‑M1/1‑8 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:18381362/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:21917099/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:21713280/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:11173586/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:6215451/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:16286960/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:32427207/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgcc > 1:28012587/1‑66 (MQ=255) ccgGCAAAATTATAGGCGTGCGGCTTTCCGCGGGGGCCTGCGCCCGCAGTGAAGGCATGGTGcgccgc < 1:33138334/67‑1 (MQ=255) cAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggc < 1:30919524‑M1/67‑64 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgt < 1:1960305‑M1/68‑66 (MQ=255) aTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgta > 1:20531066‑M1/1‑2 (MQ=255) aTcagcacgccgataatattgccgcgcggatcgatgg < 1:34336532‑M1/37‑36 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:15892986‑M1/68‑68 (MQ=255) tattatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGc < 1:1284377/68‑1 (MQ=255) | AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |