| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2540715 | 218 (0.520) | 15 (0.040) | 4/94 | NT | 5.9% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 297 (0.850) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
Only 100 of 369 total aligned reads displayed.
ACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGATCTCGAC > CP009273/2540663‑2540796 | actacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTg > 1:20868264/1‑68 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:14065058‑M2/68‑2 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:8774712‑M2/68‑2 (MQ=255) cTACGCCGCTTTTCACGAATTGTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:31880663‑M2/68‑2 (MQ=255) cGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:9753964‑M2/67‑4 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:13062702‑M2/67‑5 (MQ=255) ccGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc < 1:22301894‑M2/68‑7 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:18117498‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:25451352‑M2/1‑60 (MQ=255) ttttCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGt > 1:28130362/1‑68 (MQ=255) tttCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGt < 1:10929531/67‑1 (MQ=255) tCACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg < 1:7628387/68‑1 (MQ=255) cACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:28901620/68‑1 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg > 1:30756811/1‑66 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGcc < 1:5134922/68‑1 (MQ=255) aTTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc > 1:9662448/1‑68 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg < 1:11705535/68‑1 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg < 1:33674800/68‑1 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg < 1:23170419/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:26406489/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:25210196/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:17921732/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTCTCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:23003785/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:26171555/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:24221886/1‑68 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:10007012/68‑1 (MQ=255) tGGTCTGCCCATCGATCCCCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:17575383‑M2/1‑43 (MQ=255) tGGTCTGCCCACCCATCCGCGCGGCAATATTATCGGCGTGCGGattgccgcgcggatcgatgggcaga > 1:25827144‑M2/1‑43 (MQ=255) tGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:23719175‑M2/1‑43 (MQ=255) tGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:25391135‑M2/1‑43 (MQ=255) cggtCTGCCCATCGACCCGCGCGCCAATATAATCGGCGGGCTGattgccgcgcggatcgatgggcaga > 1:25984186‑M2/2‑43 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt < 1:32668834/68‑1 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAta > 1:32088346/1‑66 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:7177070/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:28324793/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:4396491/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:27741362/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:2026159/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:9006361/1‑68 (MQ=255) tGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGaa < 1:22697338/68‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:16481799/67‑1 (MQ=255) cGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATgg < 1:6555377/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:2678661/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:26971343/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:15812704/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt < 1:8426/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:20718049/1‑68 (MQ=255) aTCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:21342767/1‑67 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:19843324/1‑68 (MQ=255) ccGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:30309964/1‑67 (MQ=255) ccGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:11153033/1‑67 (MQ=255) cgcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgcg > 1:5348840/1‑67 (MQ=255) gcgcgTCAATATTATCGGCGTGCTGATTGCCGGGTGGGCGTGCGCCCGCATTGATGGCATGGTGcgcc < 1:34809009/68‑1 (MQ=255) gcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgcc > 1:15565822/1‑68 (MQ=255) gcgcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgcc < 1:15150395/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:27344158/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:34659682/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:6215451/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:21917099/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:21713280/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:28781821/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:9404174/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:28004488/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:16286960/68‑1 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:8884715/68‑1 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:187685/68‑1 (MQ=255) aaTATTATCGGCGGGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:16734521/68‑1 (MQ=255) atatTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt > 1:10507159/1‑67 (MQ=255) attatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGcc > 1:19055616/1‑68 (MQ=255) attatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGcc > 1:19350395/1‑68 (MQ=255) attatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGcc > 1:6319904/1‑68 (MQ=255) attatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGcc > 1:12713039/1‑68 (MQ=255) tatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGGATTGAAGGCATGGTGCGCCGCTTTATGCggg > 1:23859291/1‑68 (MQ=255) tatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCgg > 1:10028397/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:33169798/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:32892107/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:18425889/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:22795992/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:4854627/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:18339975/1‑68 (MQ=255) cGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACg > 1:31014908/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa < 1:13742079/68‑1 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:29359297/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:29791840/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:8110293/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:12426228/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:17255027/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa < 1:14857090/68‑1 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:5770076/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:14504756/1‑68 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa < 1:4089488/68‑1 (MQ=255) ggCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:34513042/1‑68 (MQ=255) gCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:6097671/1‑67 (MQ=255) gCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:15922179/1‑67 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:31452685/1‑66 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGa > 1:34090986/1‑66 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAt < 1:29625777/67‑1 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAt < 1:21511599/67‑1 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGAt < 1:19569712/67‑1 (MQ=255) cGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGCACGAt < 1:24966471/67‑1 (MQ=255) | ACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGCCGGACGATCTCGAC > CP009273/2540663‑2540796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |