| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2925176 = | NA (NA) | 6 (0.020) | 5/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
Only 100 of 160 total aligned reads displayed.
TTGTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2925252‑2925176‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTC > CP009273/2925206‑2925271 TTGTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGC < 1:11278096/68‑1TTGTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGC > 1:11867713/1‑68TTGTAGAGCATTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGC < 1:21767886/68‑1 TGTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCG < 1:22989442/68‑1 TGTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCG > 1:5540715/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCTGCGT < 1:30057871/68‑1 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT > 1:9860492/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT > 1:26460363/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT > 1:29062196/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT < 1:24391823/68‑1 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT > 1:23868095/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT < 1:34176028/68‑1 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT > 1:1728842/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT < 1:5623929/68‑1 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT < 1:7857682/68‑1 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT > 1:6491544/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGT > 1:13675823/1‑68 GTAGAGCTTTACCATACCGCCTGGTAAATGCACTGATGTGATAATCCCGGATACGACGATTGCGGCGT < 1:7279881/68‑1 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTAT < 1:3363514/68‑1 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:28474701/1‑67 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:19222280/1‑67 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:11535106/1‑67 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:18779302/1‑67 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:18465639/1‑67 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:29722779/1‑67 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:4361619/1‑67 AGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTA > 1:5868843/1‑67 AGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCC > 1:12003775/1‑68 AGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCC > 1:20065760/1‑68 AGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCC > 1:24188970/1‑68 AGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCC > 1:30399939/1‑68 AGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCC > 1:5239165/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATTCCGGATACGACGTTTGCGGCGTATCCG > 1:15025378/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:964065/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:10266946/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:28331960/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:27094843/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:31980624/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:9357865/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:9199349/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:31345638/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:3164192/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:32821726/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:33839799/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:7537166/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:5117709/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:6057372/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:6239981/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:22183042/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:19020815/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:18089529/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:17865719/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:17549055/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:26797410/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:19673639/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:16540968/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:16057210/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:23445803/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:12571810/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:12696419/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:24425177/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:14712339/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:14519415/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:13929757/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:10309459/1‑68 GCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTATGCGGCGTATCCG > 1:34709039/1‑68 TTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCG > 1:33144353/1‑66 TACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCAT < 1:17241889/68‑1 ACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCATT < 1:3541968/68‑1 CCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCATTA < 1:28980448/68‑1 CCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCATTA < 1:6284521/68‑1 CCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCATTA < 1:8749151/68‑1 CCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCATTA < 1:5995565/68‑1 AATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCATTATCACATCAGCGCATT < 1:32304295/68‑1 TGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCG < 1:19133180/67‑1 CGGAAACGACGTTTGCGGCGAATCCGGCATTAACACATCAGCGCATTTACCAGGCGGTATGGTAAAGC < 1:1709271/68‑1 CGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGC < 1:7132386/68‑1 CGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGC < 1:19228210/68‑1 CGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAG < 1:24270419/67‑1 ATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:33446994/1‑68 ATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT < 1:4353916/68‑1 ATCCGGCATTATAACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT < 1:10764182/68‑1 TCCGGCATTATCACATCAGCGCATTTACCGGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:15798671/1‑67 TCCGGCATTATCACATCAGCGCATTTACCAGGCTGTATGGTATATCTCTACAATATCCTCAAGCGTTG < 1:13646119/68‑1 TCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:31173251/1‑67 TCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:21092238/1‑67 TCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:6359205/1‑67 TCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:8228648/1‑67 TCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:25000656/1‑67 TCCGGCATTATCACATCAGCGCATTTACCAGGCGGT < 1:793777/36‑1 CCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGC < 1:9321731/68‑1 CCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGC < 1:4703814/68‑1 CCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGC < 1:30024488/68‑1 CCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGC < 1:25653157/68‑1 CCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGC < 1:27556727/68‑1 CCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTT > 1:8157997/1‑66 GGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCT > 1:31871292/1‑67 GCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTC > 1:15634882/1‑68 GCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTC > 1:15969950/1‑68 CATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTC < 1:6385439/67‑1 TTGTAGAGCTTTACCATACCGCCTGGTAAATGCGCTGATGTGATAATGCCGGATACGACGTTTGCGGCGTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2925252‑2925176‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTC > CP009273/2925206‑2925271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |