| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2925176 = | NA (NA) | 6 (0.020) | 5/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
Only 100 of 547 total aligned reads displayed.
AATTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAC > CP009273/2925140‑2925273 | aaTTTACAGCAATTGCGGTTGGTACGGTAACGTCTAGCCGTATACGCCGCAAACGTCGTATCCGGCa < 1:31812494/67‑1 (MQ=255)aaTTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCa < 1:18040766/67‑1 (MQ=255)aaTTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCAt < 1:24207220/68‑1 (MQ=255)aaTTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCAt < 1:31523764/68‑1 (MQ=255) tttACTGAAATTGCGGTTGTTACGGTAACGTCGTGCATGATACGACGCAAACGTCGTATCCGGCATTa < 1:27530610/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:9672189/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:22829980/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:29393865/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:18974446/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:32675774/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:8404981/68‑1 (MQ=255) ttaaCAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTAACCGGCATTa < 1:34379950/65‑1 (MQ=255) ccataccgcctggtaaatgcgctgatgtgataatgccggatacgacgtttgcggcgtatccggcATTa < 1:15126206‑M2/4‑1 (MQ=255) ccataccgcctggtaaatgcgctgatgtgataatgccggatacgacgtttgcggcgtatccggcATTa < 1:28980448‑M2/4‑1 (MQ=255) aCAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTAtaa > 1:3660168/1‑66 (MQ=255) gCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACAt > 1:6815836/1‑68 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATcaca < 1:25587276/65‑1 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGGCGTATCCGGCATTATcaca < 1:18479093/65‑1 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCCGATACGCCGCAAACCTGGTAACCGGCATTTTAACATc > 1:2976776/1‑67 (MQ=255) tGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATACGGCATTATCACATCAgc > 1:22494345/1‑67 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:14634895/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:19786419/68‑1 (MQ=255) ggTTGGTACGGTAACGGCGAGCCCGATAAGCCCCAAAAGTCGTATACGGCATTTTAAAATAAGCGCAt > 1:18765944/1‑68 (MQ=255) ggTTGGTACGGTAACGGCGAGCCCGATAACCCGCAAAACTCGTATACGGCCATATAACAAAAGCGCaa > 1:15008002/1‑67 (MQ=255) ttGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCAtt < 1:30734129/67‑1 (MQ=255) tGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCAttt < 1:4298638/67‑1 (MQ=255) cgctgatgtgataatGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTAcc < 1:7817560‑M1/53‑1 (MQ=255) aCGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAg < 1:20759284/68‑1 (MQ=255) cGGTAACGGCGAGCCGGATACCCCGCAAACGTCGTATACGGCATTATAACATCAGCGCATTTACCAg > 1:102081/1‑67 (MQ=255) gTAACGGCGAGCCGGATACGCCGCAAACGTCGTTTACGGCATTATCACATCAGCGCATTTTCCAGGCg > 1:21019674/1‑68 (MQ=255) gTAACGGCGAGCCGGATAAGCCGCAAACGTCGTATACGGCATTATACCATAAGCGCATTTAACAGGCg > 1:27064533/1‑68 (MQ=255) tgtgataatgccggatacgacgtttgcggcgtatccggcATTATCACATCAGCGCATTTACCAGGCg < 1:19133180‑M2/28‑1 (MQ=255) tAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCg < 1:12053460/67‑1 (MQ=255) tAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCg < 1:28148103/67‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATGCGGGATTTTCACCTAAGCGCATTTACCAGGGGGt > 1:12803710/1‑68 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:4757764/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:3096044/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:27813156/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:871398/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt > 1:34821056/1‑68 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:5950904/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:32311521/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:29159433/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:8132669/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:31278409/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:3050713/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:26053689/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:14034211/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:17155267/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:18274568/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:12559778/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:11711939/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:10820977/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:233465/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAAAGTAGTATCCGGCATTATAACATCAGCGCATTTACCAGGCGGt > 1:17668787/1‑68 (MQ=255) aaCGGCGAGCCCGATACCCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:23587398/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATg < 1:15586430/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATg < 1:30137838/68‑1 (MQ=255) cGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGt > 1:4586165/1‑68 (MQ=255) cGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTAACAGGCGGTATGGt > 1:33185247/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:31980624‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:14379177‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:33839799‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:5117709‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:1705156‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:9357865‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:6239981‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:9199349‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:19568949‑M1/1‑68 (MQ=255) GGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGct > 1:5820828‑M1/1‑68 (MQ=255) GGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGct > 1:9081026‑M1/1‑68 (MQ=255) ATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct < 1:11429401‑M1/68‑1 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:33525326‑M1/1‑67 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct < 1:16377148‑M1/67‑1 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:28474701‑M1/1‑67 (MQ=255) ACGCCGCAATCGTCGTATCCGGGATTATCACATCAGTGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:7279881‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:26460363‑M1/1‑68 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:34176028‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:23868095‑M1/1‑68 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:212350‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:1728842‑M1/1‑68 (MQ=255) GCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAATGCTCTACaa < 1:21767886‑M1/68‑1 (MQ=255) ccgcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAat > 1:6089324/1‑68 (MQ=255) cgcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTTAAGCTCTACAata > 1:10721084/1‑68 (MQ=255) cgcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAat < 1:3880279/67‑1 (MQ=255) gcAAAGGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGGGGTATGGTAAAGCTCTACAatat < 1:13152641/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:13680745/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:7947282/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:22003432/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:24417723/68‑1 (MQ=255) cgtcgtATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGTTAAAGCTCTACAATATCCTCa > 1:33363371/1‑68 (MQ=255) cgtcgtATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCa > 1:17550625/1‑68 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc > 1:6373799‑M2/11‑68 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc < 1:19228210‑M2/58‑1 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc > 1:7521880‑M2/11‑68 (MQ=255) tccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGtt > 1:25000656‑M2/7‑67 (MQ=255) ccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGc < 1:30024488‑M2/63‑1 (MQ=255) cggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCt < 1:5380143‑M2/64‑1 (MQ=255) gcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTc > 1:32865942‑M2/3‑68 (MQ=255) gcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTc > 1:15969950‑M2/3‑68 (MQ=255) | AATTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAC > CP009273/2925140‑2925273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |