| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3228020 = | NA (NA) | 10 (0.030) | 6/88 | NT | 7.8% | noncoding (24/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 3228063 = | 119 (0.360) | noncoding (67/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 171 total aligned reads displayed.
AGATTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3228098‑3228020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTC > CP009273/3228063‑3228128 AGATTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCA > 1:8538011/1‑68AGATTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCA > 1:13187632/1‑68 GATTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAG > 1:16844400/1‑68 ATTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAG > 1:19173300/1‑67 TTGGGAGTTACCTGCCGGATGCGGCGTAATCGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAG < 1:15975864/66‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGC < 1:13730633/68‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGG < 1:20959513/67‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGG < 1:30882608/67‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGG < 1:25264122/67‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGG < 1:8495904/67‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGG < 1:10706195/67‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAG < 1:29430124/66‑1 TTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAG < 1:28158232/66‑1 TGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCC > 1:11363823/1‑68 TGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCC > 1:26418093/1‑68 TGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCC < 1:20314303/68‑1 TGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCC > 1:16631305/1‑68 GGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCG < 1:5351753/68‑1 GAGTTACCTGCCGGATGCGTCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:17552076/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:3381062/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:4414881/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:34475860/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:14521863/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:24432013/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:24549305/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:2540521/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:13094526/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:12811995/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:30718382/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:10071412/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:269610/67‑1 GAGTTACCTGCCGGATGCGGCGTAAACGCCTTACCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:10974035/67‑1 GAGTTACCTGCCGGATGCGGCGCAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:32181639/67‑1 GAGATACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGG < 1:15386742/67‑1 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGGGCGTTACTCCAGGCCGGAT > 1:5964946/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:2791258/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:23710062/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:34636116/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:10094870/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:1986873/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:19069706/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:4588002/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:14940176/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:13496778/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:8298878/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:11255072/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGAT > 1:11074020/1‑68 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGA < 1:17959257/67‑1 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGA < 1:31821417/67‑1 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGA < 1:4491956/67‑1 AGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTACAGGCCGGAT > 1:7879831/1‑68 AGTTACCTGCCGGATGAGGCGTAAACGCCTTATCCTGCCTACGTTCAGCACGTTACTCCAGGCCGGt < 1:34550329/67‑2 GTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATA > 1:15104872/1‑68 ACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAG > 1:34290713/1‑67 CTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGGCG < 1:9681288/68‑1 GGCGTAAACGCCTTATCCGGCCTACGTTCACCACGTTACCCCCGCCCGGATAAGGCGTTTACGCCGC < 1:7274294/67‑1 acCCGGCCTACGTTCACCACGTACCGCCCGGCCGGAAAAGGCGTTTACGCCGCATCCGGCAGGTAACT < 1:17029868/66‑1 CTACGTTCACCCCGTTACACCCGGCCGCAAAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAT < 1:5069614/67‑1 TTCAGCACGTTACTCCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACC > 1:3058544/1‑68 GCACGTTACTCCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACG > 1:21373349/1‑68 GGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTC > 1:32329996/1‑68 GCCGGATAAGGCGTTTACGCCGCTTCCGGCAGGTAACTCCCAATCTTACCGCCGCCGTCCCAGCTTC > 1:22553751/1‑67 GCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTC > 1:3822667/1‑67 GCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTC > 1:3285892/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:29948782/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:3673906/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:24630134/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:24071620/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:14737621/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:4515880/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:8841486/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:1548772/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:11946335/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCA > 1:1116260/1‑67 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTC < 1:12286190/66‑1 CCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCGTCc > 1:30284997/1‑66 CGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACC > 1:1448064/1‑68 CGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCAC < 1:4139454/67‑1 GATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACC > 1:33067105/1‑66 ATAAGGCGTTTACTCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:5895524/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:21768824/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:15920627/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:12272456/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:3501888/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:27465473/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:3200572/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:30858745/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:25547635/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:25953542/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:26745779/67‑1 ATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGC < 1:10980166/67‑1 tacGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCGAGCTTCACCGGTT > 1:4861427/4‑68 TAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGCCGTCCCAGCTTCACCGCTT > 1:21468687/1‑68 TAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTT < 1:20584034/68‑1 TAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTT > 1:7548352/1‑68 TAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTT < 1:5924899/68‑1 TAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTT < 1:22009043/68‑1 TAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTT < 1:27039795/68‑1 TAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCT < 1:28086584/67‑1 AGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTC > 1:27500761/1‑68 AGATTGGGAGTTACCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3228098‑3228020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTC > CP009273/3228063‑3228128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |