| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3228020 = | NA (NA) | 10 (0.030) | 6/88 | NT | 7.8% | noncoding (24/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 3228063 = | 119 (0.360) | noncoding (67/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 349 total aligned reads displayed.
TGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAG > CP009273/3227996‑3228130 | tGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAgg < 1:26739442/68‑1 (MQ=255) ctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccaggccggataagGCg < 1:9681288‑M2/3‑1 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg > 1:17330120/1‑68 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg > 1:22360392/1‑68 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg > 1:12137935/1‑68 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg > 1:19608987/1‑68 (MQ=255) cGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg < 1:11079344/67‑1 (MQ=255) cGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg < 1:2199597/67‑1 (MQ=255) tGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTa < 1:11504579/67‑1 (MQ=255) tGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAc < 1:14935454/68‑1 (MQ=255) atgcggcgtaaacgccttatccggcctacgttcagcacgttactccaggccggataagGCGTTTAcg < 1:34436118‑M2/9‑1 (MQ=255) cGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccgc > 1:20785657/1‑68 (MQ=255) cGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccgc < 1:20281941/68‑1 (MQ=255) ggcgtaaacgccttatccggcctacgttcaccacgttacccccgcccggataagGCGTTTAcgccgc < 1:7274294‑M2/13‑1 (MQ=255) gCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:5353181/1‑68 (MQ=255) gCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAACGCGTTTACGCCGCa > 1:6723740/1‑68 (MQ=255) ttGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATc < 1:7730423/68‑1 (MQ=255) cgtaaacgcCTTATCCGGCCTGGAGTAACGTGGTGCACGTTGGCCGGGTAAGGCGTTTACGCCGCAt < 1:26355816‑M1/58‑1 (MQ=255) gCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:20351066/68‑1 (MQ=255) gCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:31388380/68‑1 (MQ=255) gCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:16269417/68‑1 (MQ=255) gCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:8115419/68‑1 (MQ=255) cgcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg < 1:31845012/67‑1 (MQ=255) cgcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg < 1:1477963/67‑1 (MQ=255) cgcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 1:32503493/68‑1 (MQ=255) acgcCTTATCCGGCCTGGCGTAACGTGCTGAGCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa < 1:25226751‑M1/64‑1 (MQ=255) gTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAgg < 1:27930448/68‑1 (MQ=255) gTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAgg < 1:6936460/68‑1 (MQ=255) tCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGt > 1:9071740/1‑68 (MQ=255) CTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCGTCCGGCAGGTa < 1:27810540‑M1/68‑1 (MQ=255) CTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa < 1:13254002‑M1/68‑1 (MQ=255) ATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:15263523‑M1/1‑68 (MQ=255) ATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:19069706‑M1/1‑68 (MQ=255) ATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:8298878‑M1/1‑68 (MQ=255) ATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:11671746‑M1/1‑68 (MQ=255) ATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:11255072‑M1/1‑68 (MQ=255) ATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:4588002‑M1/1‑68 (MQ=255) ATCCGGCCTGGAGCAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:26934854‑M1/1‑68 (MQ=255) TCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt < 1:4491956‑M1/67‑1 (MQ=255) TCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt < 1:34242878‑M1/67‑1 (MQ=255) TCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt < 1:10582012‑M1/67‑1 (MQ=255) TCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt < 1:17959257‑M1/67‑1 (MQ=255) TCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTc > 1:29764209‑M1/1‑68 (MQ=255) CCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGGTAAGGCGTTTACGCCGCATCCGGCAGGTAACTc < 1:10974035‑M1/67‑1 (MQ=255) CCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTGCGCCGCATCCGGCAGGTAACTc < 1:32181639‑M1/67‑1 (MQ=255) CCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTTACTc < 1:13979659‑M1/67‑1 (MQ=255) CCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTc < 1:24549305‑M1/67‑1 (MQ=255) CCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTc < 1:10071412‑M1/67‑1 (MQ=255) CCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTc < 1:2568881‑M1/67‑1 (MQ=255) GGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCa > 1:15429693‑M1/1‑68 (MQ=255) CCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTACCTCCCaa < 1:5307089‑M1/67‑1 (MQ=255) CCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa < 1:30882608‑M1/67‑1 (MQ=255) CCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa < 1:20959513‑M1/67‑1 (MQ=255) CCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa < 1:21737209‑M1/67‑1 (MQ=255) CCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa < 1:8495904‑M1/67‑1 (MQ=255) CTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATc > 1:16844400‑M1/1‑68 (MQ=255) aGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTa > 1:2279592/1‑67 (MQ=255) ttcagcacgttactccaggccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc > 1:3058544‑M2/29‑68 (MQ=255) gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc > 1:5047078/1‑68 (MQ=255) gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc > 1:16635429/1‑68 (MQ=255) gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc > 1:31534473/1‑68 (MQ=255) cGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacg > 1:7545083/1‑68 (MQ=255) cGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacg > 1:24655212/1‑68 (MQ=255) cGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacg > 1:29539310/1‑68 (MQ=255) cGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacg > 1:2377429/1‑68 (MQ=255) tGCTTAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacg < 1:19006779/66‑1 (MQ=255) gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGacgacg < 1:32019674/68‑1 (MQ=255) gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGacgacg < 1:18319781/68‑1 (MQ=255) gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGacgacg < 1:9400033/68‑1 (MQ=255) gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGacgacg < 1:34619843/68‑1 (MQ=255) gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGacgacg > 1:4073188/1‑68 (MQ=255) tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGt < 1:27407552/67‑1 (MQ=255) tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGt < 1:23061744/67‑1 (MQ=255) tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGt < 1:13004151/67‑1 (MQ=255) tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGt < 1:24085171/67‑1 (MQ=255) tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGt < 1:33472743/67‑1 (MQ=255) tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTc < 1:29282503/68‑1 (MQ=255) aaCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGCCGACGTccc > 1:30832481/1‑68 (MQ=255) aCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCa > 1:28999095/1‑68 (MQ=255) ggccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTc > 1:32329996‑M2/12‑68 (MQ=255) gccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTc > 1:3822667‑M2/11‑67 (MQ=255) gccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTc > 1:12721689‑M2/11‑67 (MQ=255) gccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTc > 1:3285892‑M2/11‑67 (MQ=255) ccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTc < 1:12286190‑M2/57‑1 (MQ=255) ccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCa > 1:8841486‑M2/10‑67 (MQ=255) ccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCa > 1:1350490‑M2/10‑67 (MQ=255) ccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCa > 1:26989857‑M2/10‑67 (MQ=255) ccggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCGtcc > 1:30284997‑M2/10‑66 (MQ=255) cggataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCAcc > 1:1448064‑M2/9‑68 (MQ=255) gataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCAcc > 1:33067105‑M2/7‑66 (MQ=255) ataagGCGTTTACTCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:5895524‑M2/62‑1 (MQ=255) ataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:5938999‑M2/62‑1 (MQ=255) ataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:27465473‑M2/62‑1 (MQ=255) ataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:15871970‑M2/62‑1 (MQ=255) ataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:4297061‑M2/62‑1 (MQ=255) ataagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:3501888‑M2/62‑1 (MQ=255) taagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGCCGTCCCAGCTTCACCGCtt > 1:21468687‑M2/5‑68 (MQ=255) taagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCtt < 1:25325268‑M2/64‑1 (MQ=255) taagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCtt < 1:28500795‑M2/64‑1 (MQ=255) taagGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCt < 1:28086584‑M2/63‑1 (MQ=255) | TGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAG > CP009273/3227996‑3228130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |