| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3228020 = | NA (NA) | 10 (0.030) | 6/88 | NT | 7.8% | noncoding (24/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 3228063 = | 119 (0.360) | noncoding (67/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 471 total aligned reads displayed.
TTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTA > CP009273/3227954‑3228087 | ttttGTGTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCtt < 1:30678555/68‑1 (MQ=255) aagcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTa < 1:20584034‑M1/4‑1 (MQ=255) aagcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTa < 1:28500795‑M1/4‑1 (MQ=255) aagcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTa < 1:18310592‑M1/4‑1 (MQ=255) aagcggtgaagatgggacgtcgtcggtaagattgggaggtacctgccggatgcggcgtaaacgcCTTa > 1:4689403‑M1/65‑68 (MQ=255) ttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTa > 1:21697298/1‑67 (MQ=255) tGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTAt > 1:30331720/1‑67 (MQ=255) gcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTAt < 1:27465473‑M1/5‑1 (MQ=255) gcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTAt < 1:5938999‑M1/5‑1 (MQ=255) gcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTAt < 1:15871970‑M1/5‑1 (MQ=255) gcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTAt < 1:25547635‑M1/5‑1 (MQ=255) ggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATc > 1:33067105‑M1/61‑66 (MQ=255) tttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCgg < 1:32435756/68‑1 (MQ=255) tttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCgg < 1:13554900/68‑1 (MQ=255) ttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGc < 1:21879039/68‑1 (MQ=255) ttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGc < 1:11332357/68‑1 (MQ=255) ttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGc < 1:34040835/68‑1 (MQ=255) tgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCgg > 1:4515880‑M1/59‑67 (MQ=255) tgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCgg > 1:1548772‑M1/59‑67 (MQ=255) tgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCgg > 1:14737621‑M1/59‑67 (MQ=255) tgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCgg > 1:34585783‑M1/59‑67 (MQ=255) tgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCgg > 1:11946335‑M1/59‑67 (MQ=255) tgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCgg > 1:8841486‑M1/59‑67 (MQ=255) gaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCGGcc > 1:13028727‑M1/58‑68 (MQ=255) gaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCGGc > 1:3822667‑M1/58‑67 (MQ=255) gaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCGGc > 1:14859191‑M1/58‑67 (MQ=255) gaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCGGc > 1:30143274‑M1/58‑67 (MQ=255) aTGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGTCCt < 1:1634257/68‑1 (MQ=255) aTGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCt < 1:7122966/68‑1 (MQ=255) aTGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCt < 1:23089533/68‑1 (MQ=255) agctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCGGCCt < 1:8170540‑M1/12‑1 (MQ=255) ggAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTgg > 1:4166076/1‑68 (MQ=255) ggAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTgg < 1:6490884/68‑1 (MQ=255) ggAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTgg < 1:18846716/68‑1 (MQ=255) ggAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTgg < 1:3517189/68‑1 (MQ=255) gAAGCGCGATTCCAGAACTGGTCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGa > 1:29207100/1‑68 (MQ=255) aaGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGa < 1:2597548/67‑1 (MQ=255) gcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTaa < 1:9207384/67‑1 (MQ=255) gcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTaa < 1:24776537/67‑1 (MQ=255) gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGt < 1:16687172/68‑1 (MQ=255) gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGt < 1:32685672/68‑1 (MQ=255) ttCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGc < 1:22807205/68‑1 (MQ=255) ttCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGc < 1:24507442/68‑1 (MQ=255) cgtcggtaagattgggagttacctgccggatgcggcgtaaacgcCTTATCCGGCCTGGAGTAACGTGc > 1:21373349‑M1/45‑68 (MQ=255) ccAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTg > 1:62395/1‑68 (MQ=255) cAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGa < 1:20177327/68‑1 (MQ=255) aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGCACg > 1:26929016/1‑68 (MQ=255) aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg > 1:29772349/1‑68 (MQ=255) aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg > 1:10067414/1‑68 (MQ=255) aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg > 1:14439248/1‑68 (MQ=255) aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg > 1:31144526/1‑68 (MQ=255) aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg > 1:27239205/1‑68 (MQ=255) aaCTGGGCAGACATTGCCGGATGAGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg > 1:23477777/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGaa < 1:12672590/65‑1 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAc < 1:22364426/66‑1 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAc < 1:13266291/66‑1 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAc < 1:21967386/66‑1 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAc < 1:13888169/66‑1 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAc < 1:7249830/66‑1 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:24984120/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:8498221/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:32583503/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:25243622/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:16204023/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:19679540/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:19842222/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:27037755/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:28306627/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:4896247/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:27644995/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAc < 1:27878510/66‑1 (MQ=255) gggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAgg < 1:7745456/68‑1 (MQ=255) gggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAgg < 1:10856043/68‑1 (MQ=255) gggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAgg < 1:573971/68‑1 (MQ=255) gggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAgg < 1:20866138/68‑1 (MQ=255) gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGcc > 1:12360133/1‑68 (MQ=255) aGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCg < 1:5471346/67‑1 (MQ=255) aGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCg < 1:7404804/67‑1 (MQ=255) gagttacctgccggatgcggcgtaaacgcCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCgg > 1:31966837‑M1/30‑67 (MQ=255) agttacctgccggatgcggcgtaaacgcCTTTTCCGGCCGGGCGGTACGTGGTGAACGTAGGccgggt < 1:17029868‑M1/40‑3 (MQ=255) cATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCgg < 1:33291998/65‑1 (MQ=255) cATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCgg < 1:31578758/65‑1 (MQ=255) cATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATa > 1:3356902/1‑68 (MQ=255) cATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATa > 1:32189194/1‑68 (MQ=255) tGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAgg < 1:6860033/68‑1 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg > 1:17330120/1‑68 (MQ=255) cGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg < 1:11079344/67‑1 (MQ=255) cGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg < 1:27988972/67‑1 (MQ=255) cGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGt < 1:20326366/68‑1 (MQ=255) aTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGttt > 1:8032132/1‑67 (MQ=255) cGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccgc < 1:19052835/68‑1 (MQ=255) cGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccgc < 1:24114942/68‑1 (MQ=255) cGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccgc < 1:5071003/68‑1 (MQ=255) cgtaaacgcCTTATCCGGCCTGGAGTAACGTGGTGCACGTTGGCCGGGTAAGGCGTTTACGCCGCAt < 1:26355816‑M1/58‑1 (MQ=255) gCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:31388380/68‑1 (MQ=255) cgcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc > 1:11637030/1‑68 (MQ=255) cgcCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg < 1:9681288‑M1/65‑1 (MQ=255) gTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg < 1:15120989/67‑1 (MQ=255) tCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGt > 1:9071740/1‑68 (MQ=255) CTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGt > 1:34290713‑M1/1‑67 (MQ=255) | TTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTA > CP009273/3227954‑3228087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |