BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3462138	472 (1.130)	27 (0.090)	9/78	NT	6.1%	coding (1075/2694 nt)	chiA	periplasmic endochitinase
*	?	CP009273	3462463 =	504 (1.740)	27 (0.090)	9/78	NT	6.1%	coding (750/2694 nt)	chiA	periplasmic endochitinase

Only 100 of 410 total aligned reads displayed.

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3462055‑3462138

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  CP009273/3462463‑3462529

 CGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAA                                                                                     >  1:24209170/1‑67

 CGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAA                                                                                     >  1:34834400/1‑67

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACC                                                                                   <  1:21803544/68‑1

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAAC                                                                                    >  1:23160289/1‑67

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAAC                                                                                    >  1:12665028/1‑67

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAAC                                                                                    >  1:18555618/1‑67

  GCTCGAGACGCCATGGGTTATTGGAGTATTCAGCGATGGTACCCCGTGGGCAATGTTAAGACCCAAC                                                                                    >  1:26207731/1‑67

   CTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  >  1:25331599/1‑68

   CTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  >  1:27744207/1‑68

    tctAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCACGTGGGCAATCTTTAGACCCAACCCA                                                                                 <  1:16653710/65‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCA                                                                                 <  1:4600188/68‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCA                                                                                 <  1:13919483/68‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  <  1:29651293/67‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  <  1:24667069/67‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  <  1:17925470/67‑1

      GAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACC                                                                               <  1:23567892/68‑1

        GACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCA                                                                              <  1:10571704/67‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           <  1:2102387/68‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           <  1:32309246/68‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:30157158/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:10725279/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           <  1:18409749/68‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           <  1:2901731/68‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           <  1:18313545/68‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGAACCTACCCACCAGGC                                                                           >  1:5126512/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGAAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:19847497/1‑68

             CATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:14070297/68‑1

             CATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:7346066/68‑1

             CATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:21672896/68‑1

             CATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:29199946/68‑1

             CATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAACCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:12887705/68‑1

              ATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGT                                                                         >  1:33371842/1‑66

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:28497162/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:16489294/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:15888446/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:26852809/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:15471887/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:32540426/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:14523518/68‑1

                              TTCATCTCTCGTACCCCGTGGGCAATCTTAAGACCCAACCCACCAGGCGTTCTTATAAATGCCGCCGT                                                       <  1:13695029/68‑1

                                  GCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAATGGAGCCGTTATA                                                   >  1:7554616/1‑68

                                     aTGGCACCGCGTGGGCAATATTTAGACCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAT                                                <  1:14274193/67‑1

                                        gcACCCCGTGGGCAATCTTCAGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAT                                                <  1:34660591/63‑1

                                          ctgCCGTGGGCAATTTTTAGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGT                                           <  1:19060082/65‑1

                                            CCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTATTATAAATGCCGCCGTTATAGATAACGTA                                          >  1:27554154/1‑67

                                                                     CCACCAGGCGTTATTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGCACGTAACTGACCat                >  1:12353473/1‑66

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGTTAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:9532391/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:22842590/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:7184434/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:11030990/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:8318158/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:28215759/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:20081864/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:4216394/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:21352874/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:4876322/68‑1

                                                                       ACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               >  1:17765872/1‑67

                                                                       ACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               >  1:34060037/1‑67

                                                                       ACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAACCCCCTTCCTGACGTTT               >  1:13236193/1‑67

                                                                       ACCAGGCGTTATTATAAATGCCGCCGTTATAGATAACGTAACAAGTAGAAGACCCTTCCTGACCTTT               >  1:18809286/1‑67

                                                                         CAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCA            >  1:26636100/1‑68

                                                                          AGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:1741981/1‑68

                                                                           GGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:33004117/1‑67

                                                                           GGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:11564596/1‑67

                                                                           GGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:6858159/1‑67

                                                                            GCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTGCCAG           >  1:33893019/1‑66

                                                                             CGTTCTTATAAATGCCGCCGTTATATATAACGTAGCATTTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:1194313/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAATGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:20245031/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:6132058/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:5891549/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:1503389/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:11439057/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:31745850/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:31181722/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:30743396/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:10285075/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:27130027/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:19603356/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:25654644/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:2492638/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:20549982/66‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:16272212/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:16800525/1‑67

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:8782996/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:558710/67‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:6522790/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:1001861/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:3676164/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:34194917/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:33758824/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:15187362/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:15673671/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:30032471/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:19238132/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:22447307/68‑1

                                                                                   TATAAATGCTGCCGTTATTGATAACGTACCATGTAGAAGAACCTTCGTGACGTTTCCAGGCTACTACA  <  1:31615986/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:12505422/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:3351702/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:8000532/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  1:8544651/1‑68

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3462055‑3462138

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  CP009273/3462463‑3462529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.