| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 472 (1.130) | 27 (0.090) | 9/78 | NT | 6.1% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 504 (1.740) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 785 total aligned reads displayed.
GGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA > CP009273/3462396‑3462529 | gttattggagttttcagcgctggtaccccgtgggcaatctttagacccaacccaccaggcgttcttat > 1:14277357‑M2/67‑68 (MQ=255) gttattggagttttcagcgctggtaccccgtgggcaatattccgagcctacccaccaggcgttctta < 1:33531922‑M2/1‑1 (MQ=255) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAAt > 1:9562847/1‑67 (MQ=255) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAAt > 1:20094329/1‑67 (MQ=255) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCAGCGCCTACCCACCAGGCTTTGTCATAAATg > 1:8471198/1‑68 (MQ=38) tGGCATAGTTTTCTTTCTCATAGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAAt > 1:17230181/1‑67 (MQ=39) gCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATgcc > 1:6565258/1‑68 (MQ=255) tCGTGTTCTTTCGCATCGCCTTGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATgccgcc < 1:12100412/68‑1 (MQ=255) tttttCTTTGGTTTCGCGTGGGGAATTTTACGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:30648631/67‑1 (MQ=25) ttcttctttcGGATCGCCTGGGCAATATTTCGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:31274099/65‑1 (MQ=21) ttcatctctcgtaccccgtgggcaatcttaagacccaacccaccaggcgttcttATAAATGCCGCCGt < 1:13695029‑M2/14‑1 (MQ=255) gtcttctttcGCATCGCGTGGGCAATTTGCCGCGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:33820718/65‑1 (MQ=38) gctttctttcGAACCGCCTGGGCAATATTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:28765365/66‑1 (MQ=37) gTTTTCTTTCGCATCGCCTGGGCAATTTTCCGCGCCTACCCACCCGGCGTTCTTATAAATGCCGCCGt < 1:23961943/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:3409947/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:5732347/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:20935057/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:17643921/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:10264174/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:10476927/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCGGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:26475464/68‑1 (MQ=255) tctttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtata < 1:30339510/68‑1 (MQ=255) ctttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAg < 1:31972988/68‑1 (MQ=255) tttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGa > 1:8156412/1‑68 (MQ=255) ttggtaccgcctgggcaatttttagagcctacccaccaggcgttcttATAAATGCCGCCGTTATAGAt < 1:26808856‑M2/21‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:20385393/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:10845385/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:19811677/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:23391796/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCAGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:25596521/68‑1 (MQ=255) ttcGCAGCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:34859085/68‑1 (MQ=255) tacGCATCGCCTGGGCAATATGCCGCGCCTACCCACCAGGCGTTCTTATTAATGCCGCCGGTATAGAt < 1:12509119/66‑1 (MQ=255) atggCATCGCCTGGGCAATTTTCAGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:22777524/65‑1 (MQ=38) atcGCATCCCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:5205944/67‑1 (MQ=255) cgaaccccgtgggcaatatttcgagcctacccaccaggcgttcttATAAATGCCGCCGTTATAGATaa < 1:15856910‑M2/23‑1 (MQ=255) cGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATaa < 1:32544045/68‑1 (MQ=255) gCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAAc < 1:13310556/68‑1 (MQ=255) tccGCCTGGGCAATTTGTCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:34581976/66‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:34013592/68‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:5453668/68‑1 (MQ=255) gCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAcc < 1:31619384/68‑1 (MQ=255) gCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAcc < 1:29914291/68‑1 (MQ=255) gCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAcc < 1:9358602/68‑1 (MQ=255) gCCTGGGCAATTCGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAAAGTAcc < 1:24966568/68‑1 (MQ=255) ccTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCa > 1:21944918/1‑68 (MQ=255) gtgggcaatttttagagcctacccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCAt < 1:29457304‑M2/31‑1 (MQ=255) gtGGGCAATTTGCCGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:1609946/67‑1 (MQ=255) cttggCAATTTGTAGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:28080848/65‑1 (MQ=37) cTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:8811116/68‑1 (MQ=255) cTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:7837514/68‑1 (MQ=255) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:430441/68‑1 (MQ=255) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:18135544/68‑1 (MQ=255) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:33315655/68‑1 (MQ=255) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:7574932/68‑1 (MQ=255) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:20692227/68‑1 (MQ=255) cTGGGCAATTTGCCGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:13085817/68‑1 (MQ=255) cTGGGCAATTTGACGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:15662769/68‑1 (MQ=255) gggCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGt < 1:2373263/68‑1 (MQ=255) ggCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:19366380/68‑1 (MQ=255) gCAATTTTCAGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:28490920/67‑1 (MQ=255) gCAATTTGTCGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:11777635/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTag > 1:4818126/1‑68 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:30931827/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:6983984/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:16448798/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:8577214/67‑1 (MQ=255) cAATTAGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTaga < 1:11040415/68‑1 (MQ=255) aaTTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTagaa > 1:21253309/1‑68 (MQ=255) cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:33055672/68‑1 (MQ=255) cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:18715049/68‑1 (MQ=255) cccaccaggcgttcttATAAATGCCGCCGTTATAGa > 1:32912892‑M2/17‑36 (MQ=255) ccaccaggcgttattATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGCACGTAACTgaccat > 1:12353473‑M2/16‑66 (MQ=255) ccaccaGGCGTTATTATAAAACCCGCCTTTAAAGAAAACCTACCATGTAGAAGAGCCTTGCTGACGtt > 1:16260096/1‑68 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:24365319‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:15369963‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:34724707‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:14861759‑M2/54‑1 (MQ=255) accaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCCGACCttt > 1:6316339‑M2/14‑67 (MQ=255) accaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCAAGGAGAAGAACCTTCCTGACCttt > 1:2142807‑M2/14‑67 (MQ=255) ggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAg > 1:3958433‑M2/10‑67 (MQ=255) cgttcttATACATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:14104673‑M2/59‑1 (MQ=255) cgttcttATAAATTCCGCCTTTATATATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:27256816‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:19029508‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:18346599‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:26032335‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:11439057‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:19603356‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct > 1:2468996‑M2/8‑68 (MQ=255) cggtctaATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:9003821‑M2/59‑1 (MQ=255) gttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGcta < 1:29031771‑M2/62‑1 (MQ=255) gttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct < 1:7330838‑M2/61‑1 (MQ=255) gttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct < 1:27637965‑M2/61‑1 (MQ=255) gttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct > 1:16800525‑M2/7‑67 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:1001861‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:3676164‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:22447307‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:3012249‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:15187362‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:6070208‑M2/64‑1 (MQ=255) ttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCtactac < 1:34234967‑M2/66‑1 (MQ=255) | GGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA > CP009273/3462396‑3462529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |