| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 472 (1.130) | 27 (0.090) | 9/78 | NT | 6.1% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 504 (1.740) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 771 total aligned reads displayed.
GGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462072‑3462205 | ggTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTg > 1:26244480/1‑68 (MQ=255) gTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTg < 1:24519465/67‑1 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTa > 1:33988659/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTa > 1:30559/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTa > 1:6956773/1‑68 (MQ=255) tATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaa < 1:3032929/68‑1 (MQ=255) ttGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAc < 1:12975683/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaaaa > 1:17060619/1‑66 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:12365801/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa > 1:463140/1‑68 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:3285814/68‑1 (MQ=255) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt > 1:28506457/1‑67 (MQ=255) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt > 1:10603379/1‑67 (MQ=255) aGTTTTCAGCGCTGGTACCACGTGGGCAATCTGTAGACCCAACCCACCAGGCGTTCTTTTAAACAtt > 1:7934137/1‑67 (MQ=38) tttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAcc < 1:29332883/67‑1 (MQ=255) tttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAcc < 1:29616532/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaaa > 1:16709915/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:24209565/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:18174918/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:9685376/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTATTTTAAACATGACCATTTaaaa > 1:15556718/1‑68 (MQ=255) ttgGTACCGCCTGGGCAATTTTTAGAGCCTACCCACCAGGCGTTCTTataaatgccgccgttatagat < 1:26808856‑M1/67‑22 (MQ=255) atgGCACCGCGTGGGCAATATTTAGACCCAACCCACCAGGCGTTCTTataaatgccgccgttatagat < 1:14274193‑M1/67‑22 (MQ=255) tACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAGTGGACCATTGAAAATAACa > 1:18506994/1‑68 (MQ=38) aCCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATGGCCGTTGAAAATAACAt > 1:20684075/1‑68 (MQ=39) cccGTGGGCTAGCTTTAGACCCAACCCTCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg < 1:23189415/68‑1 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAGGTGGCCATTGAAGATAACATgg > 1:18367561/1‑68 (MQ=37) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:31008405/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:22242721/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:32016788/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:19335014/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg < 1:32517594/68‑1 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAAATGACCGTTTAATATAACATgg > 1:16393421/1‑68 (MQ=37) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTATAAAGACAGCCATTGAAAATAACAtag > 1:7288902/1‑66 (MQ=25) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATATCATGGTa > 1:25866017/1‑68 (MQ=255) gCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt < 1:5840424/67‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:4358637/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:2022913/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:26515543/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:20821516/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGCAAATAACATGGTAAATTTCGCTACCtt < 1:23423582/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:13569093/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:11405523/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAAAATTACCATTGAAAATAACATTGTAAATTTCGCTACCtt < 1:25465082/68‑1 (MQ=39) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:2891029/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:24860866/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:27991155/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:31433944/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:15327798/1‑66 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTTAATTTCGCTACCtt > 1:32978735/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:21185823/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:19025303/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:17824667/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:13951739/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:8659437/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:9343991/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAAAATTTCCATTTAAAATAACATGCTAAATTTAGGTACCtt > 1:31543610/1‑65 (MQ=37) ccaccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGc < 1:8166537/68‑1 (MQ=255) ccaccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGc < 1:29797294/68‑1 (MQ=255) ccaccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGc < 1:6620781/68‑1 (MQ=255) ccaccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGAAAATTTCGCTACATTCCTGGCCGc > 1:30063664/1‑68 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:28215759‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:4876322‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:4005674‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:8318158‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:1093054‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:27609279‑M1/68‑55 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:20429400/68‑1 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:17697225/68‑1 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:2186959/68‑1 (MQ=255) accaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcccgaccttt > 1:6316339‑M1/1‑13 (MQ=255) accaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaacccccttcctgacgttt > 1:13236193‑M1/1‑13 (MQ=255) caGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttcca > 1:34842571‑M1/1‑11 (MQ=255) caGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCa < 1:17442977/68‑1 (MQ=255) ggCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccag > 1:18723227‑M1/1‑9 (MQ=255) ggCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccag > 1:5132245‑M1/1‑9 (MQ=255) ggCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCAc > 1:16017362/1‑67 (MQ=255) ggCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCAc > 1:34182913/1‑67 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct > 1:14557560‑M1/1‑7 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:1503389‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:19603356‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:27174342‑M1/66‑60 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:10336921/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:7577619/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:25157069/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:22554871/66‑1 (MQ=255) tttcTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:23741572‑M1/66‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:558710‑M1/67‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:33490432‑M1/67‑62 (MQ=255) gTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCt < 1:21400862/67‑1 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:3676164‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:6070208‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:34655103‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:33758824‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:1001861‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctac < 1:12668843‑M1/67‑64 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGc < 1:22822104/68‑1 (MQ=255) tataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactaca > 1:12004838‑M1/1‑1 (MQ=255) tGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAt > 1:11716902/1‑68 (MQ=255) tGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAt < 1:11150740/68‑1 (MQ=255) | GGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462072‑3462205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |