| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3999175 = | 361 (0.870) | 22 (0.060) | 11/96 | NT | 6.7% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | CP009273 | 3999197 = | 303 (0.850) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
ATTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3999247‑3999175‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA > CP009273/3999197‑3999263 ATTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:12417326/1‑68 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:32606990/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:19658951/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:5912530/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:5019109/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:29372378/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:32224107/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:4986075/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:16255586/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:23038016/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:4298515/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:14488651/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:14402887/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:33396386/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:26574080/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:33471958/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:12759250/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:12449040/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:11924089/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:26802722/1‑67 TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC > 1:3766219/1‑67 CAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCG > 1:11347237/1‑66 CAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCG > 1:680649/1‑66 CAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCG > 1:19899558/1‑66 AACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT < 1:19843500/68‑1 ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT > 1:27668473/1‑67 ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT > 1:105989/1‑67 ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT > 1:19084121/1‑67 ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT > 1:16688511/1‑67 ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT > 1:33814420/1‑67 ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACACGCGCTATTTTCAGCGCCT > 1:32030468/1‑67 CACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGT < 1:7477522/68‑1 ACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTT < 1:28101412/68‑1 CTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTT < 1:22030239/68‑1 GCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGG < 1:24492770/67‑1 CACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCA < 1:19976310/67‑1 CACATTCACCCCGATTGCCTCAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCA < 1:23359885/67‑1 ACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAAT < 1:31808965/68‑1 ACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATATTCAGCGCCTGTTTTTATTTCAGGCAAT < 1:21898742/68‑1 TTCACCCCGATTGCCTGAAATAAAAACCGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGG < 1:15278553/68‑1 TCACCCCGATTGCCTGAAATAAACACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGG < 1:21024097/68‑1 TCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGG < 1:32415483/68‑1 TCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGG < 1:26969334/68‑1 TCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGG < 1:31738657/68‑1 TCACCCCGATTGCCTGAAATAAAAACACGCGCAATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGG < 1:34370640/68‑1 TCACCCCGAAAGCCTGAAAAAAAAACAGGCGCTATTTTCACCGCCTGTTTTTATTTCAGGCAATCGGG < 1:18236199/68‑1 CACCCCGCTTGCCTGAAATAAAAACAGCCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGG < 1:33711248/68‑1 CACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGG < 1:29564947/68‑1 CACCCCGATTCCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGG < 1:1955565/68‑1 CCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGA < 1:3786272/68‑1 CCCGATTGCCTGAAATAAAAACACGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGA < 1:7166628/68‑1 CCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAA < 1:29375303/68‑1 CCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAA < 1:5474107/68‑1 cAAAAAAAAACAGCCGCTATTTTCCGCGCCTGTTTTTATTTCAGGCAATCGGGGTTAATGTGGCGCAG < 1:3589870/67‑1 AAAAACAGGCGCTATTTGCCGCCCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGA < 1:19054984/68‑1 GCTATTTTCAGCCCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAA < 1:13963514/67‑1 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:22683940/1‑68 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:12763544/1‑68 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:20056157/1‑68 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:1977846/1‑68 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:3344023/1‑68 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:17715404/1‑68 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:15640718/1‑68 GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG > 1:15001087/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:9784697/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:7978775/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:7085371/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA > 1:6904597/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA > 1:26271713/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA > 1:34820420/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:4033725/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:31438427/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA > 1:13595977/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:15043727/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:19391393/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:20432121/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:20526681/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA > 1:21286119/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:2302/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA > 1:27247810/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:2892123/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:341909/68‑1 GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCAGGA > 1:3455387/1‑68 GCCTGTTTTTATTTCAGGCAATCGGGGGGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:4704124/68‑1 GCCGGTTTTTATTGCAGGCAAGCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA < 1:24940784/68‑1 CTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGC < 1:25314884/68‑1 CTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGC < 1:22050885/68‑1 CTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGC < 1:11021477/68‑1 CTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGC < 1:10685972/68‑1 CTGGTTTTATTTCCGGCAATCGGGGGGAATGGGGCGCAGGCGGAAGTGTTGAATCTGGCGTCCGGAGC < 1:26299931/68‑1 TGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCT < 1:43562/68‑1 TGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCT < 1:17223934/68‑1 GTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA < 1:27605664/68‑1 ATTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3999247‑3999175‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA > CP009273/3999197‑3999263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |