New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =361 (0.870)22 (0.060) 11/96 NT 6.7% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 303 (0.850)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 468 total aligned reads displayed.

TGGCAAATCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTG  >  CP009273/3999108‑3999241
                                                                   |                                                                  
  gctccggacgccagattcaacacttccgcctgcgccccattccccccgattgccggaaataaaacCAg                                                                  <  1:26299931‑M1/3‑1 (MQ=255)
    tccggactccagattcaacacttccgcctgcgccacattccccccgattgcctgaaataaaaaCAGgc                                                                <  1:4704124‑M1/5‑1 (MQ=255)
    tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                >  1:27247810‑M1/64‑68 (MQ=255)
    tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                <  1:4033725‑M1/5‑1 (MQ=255)
    aaaTCTGGTATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                <  1:8177109/68‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgg                                                                 <  1:6601661/67‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                <  1:28848696/68‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                <  1:26872462/68‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACC‑‑CTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                              <  1:1768012/68‑1 (MQ=255)
      cggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgcgc                                                              >  1:1977846‑M1/62‑68 (MQ=255)
      aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                              <  1:25248831/68‑1 (MQ=255)
      aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                              <  1:15826264/68‑1 (MQ=255)
      aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTGCTCGCGCAGgcgc                                                              <  1:11169119/68‑1 (MQ=255)
        cTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTg                                                            >  1:11406220/1‑68 (MQ=255)
        cTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTg                                                            <  1:24422857/68‑1 (MQ=255)
         tGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAGGCATTGCAGTTTCTCGCGCAGGCGCTGa                                                           <  1:34178324/68‑1 (MQ=255)
            aaTCCAGCATCCAGGATTACCCTCTCAGAGCCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGaaa                                                         <  1:7123769/67‑1 (MQ=255)
            aaTCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGaaa                                                         <  1:5395039/67‑1 (MQ=255)
              tCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATa                                                      <  1:27625644/68‑1 (MQ=255)
               ccAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATa                                                      >  1:19470932/1‑67 (MQ=255)
                      ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                              <  1:21342524/68‑1 (MQ=255)
                      ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                              <  1:32820001/68‑1 (MQ=255)
                      ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                              <  1:10801539/68‑1 (MQ=255)
                       cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                             <  1:33867527/68‑1 (MQ=255)
                         ggATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtttt                                           >  1:31562711/1‑68 (MQ=255)
                         ggATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtttt                                           >  1:30254420/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttt                                            <  1:14078907/65‑1 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:29025506/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:13326043/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:6891510/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:34509457/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:22276261/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:21198340/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:20357013/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:2007099/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCATGTTTTTa                                         >  1:32279242/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTATCTCGCGCAGGCGCTGAAAATAGCGCCTGttatta                                         >  1:868067/1‑68 (MQ=255)
                            ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                        <  1:16486185/68‑1 (MQ=255)
                            ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                        <  1:23489146/68‑1 (MQ=255)
                               cccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTc                                     >  1:29247667/1‑68 (MQ=255)
                                ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                    >  1:2947791/1‑68 (MQ=255)
                                ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                    >  1:14540365/1‑68 (MQ=255)
                                      agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:1856909/1‑67 (MQ=255)
                                      agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:20863755/1‑67 (MQ=255)
                                      agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:2387075/1‑67 (MQ=255)
                                      agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:28159364/1‑67 (MQ=255)
                                        agaCTAAAAGCATTGCAGTTTCTAGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                            >  1:21802030/1‑68 (MQ=255)
                                         gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                              <  1:34259499/65‑1 (MQ=255)
                                         gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                              <  1:24951139/65‑1 (MQ=255)
                                         gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                              <  1:17196554/65‑1 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          >  1:31028565/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          >  1:27080445/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAATTCAGGCAATCggg                          >  1:3364724/1‑68 (MQ=255)
                                          aCTAAAAGCACTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          >  1:4331432/1‑68 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCCGGCAATCggg                          <  1:10411178/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                         <  1:15620779/68‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                         <  1:12308212/68‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                         <  1:3660944/68‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:8450465/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:22772510/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:11819409/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:24083713/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgg                           <  1:22592282/66‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgg                           <  1:33133762/66‑1 (MQ=255)
                                             ccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTg                       <  1:29564947‑M1/46‑1 (MQ=255)
                                              aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                      <  1:31951373/68‑1 (MQ=255)
                                              aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                      <  1:30698137/68‑1 (MQ=255)
                                               ccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCGGTTTTTATTTCAGGCAATCGGGGTGaa                     <  1:15278553‑M1/48‑1 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:9686634/1‑68 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:6501331/1‑68 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:2969599/1‑68 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    <  1:16910409/68‑1 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:1802247/1‑68 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:23183000/1‑68 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    <  1:23707674/68‑1 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:2604595/1‑68 (MQ=255)
                                                 gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                   >  1:5673300/1‑68 (MQ=255)
                                                 gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                   >  1:33448340/1‑68 (MQ=255)
                                                 gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                   >  1:7381679/1‑68 (MQ=255)
                                                  cATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                  >  1:6003391/1‑68 (MQ=255)
                                                    tgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTGAGGCAATCGGGGTGAAtgtg                 <  1:23359885‑M1/52‑1 (MQ=255)
                                                     tGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc               <  1:26544799/68‑1 (MQ=255)
                                                      gCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc               >  1:13723305/1‑67 (MQ=255)
                                                        aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa            >  1:24773724/1‑68 (MQ=255)
                                                        aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa            >  1:12452167/1‑68 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg          <  1:20538285/67‑1 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg          <  1:32508097/67‑1 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg          <  1:7929127/67‑1 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg           <  1:13932253/66‑1 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc         <  1:28596947/68‑1 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc         >  1:16160841/1‑68 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGGTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg          <  1:17430650/67‑1 (MQ=255)
                                                             ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg       >  1:14955454/1‑68 (MQ=255)
                                                             ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg       >  1:19101107/1‑68 (MQ=255)
                                                              tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa      <  1:24156100/68‑1 (MQ=255)
                                                                gcgcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAg    >  1:7656060/1‑68 (MQ=255)
                                                                gcgcAGGCGCGGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAg    >  1:9427294/1‑68 (MQ=255)
                                                                aaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAg    <  1:22030239‑M1/65‑1 (MQ=255)
                                                                  gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg  >  1:29917963/1‑68 (MQ=255)
                                                                  gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg  >  1:10104310/1‑68 (MQ=255)
                                                                   |                                                                  
TGGCAAATCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTG  >  CP009273/3999108‑3999241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.