| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4049082 | 319 (0.760) | 16 (0.040) | 12/96 | NT | 5.6% | coding (618/1050 nt) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG |
| ? | CP009273 | = 4049111 | 262 (0.730) | coding (589/1050 nt) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG | |||||
Only 100 of 129 total aligned reads displayed.
TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4049011‑4049082‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgttaccGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGTGC < CP009273/4049111‑4049045 TCCGGTAGGCTGGTATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGT < 1:34431391/68‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACTCGAGCGT > 1:23750931/1‑68TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGT < 1:10163058/68‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGT > 1:29590403/1‑68TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGT < 1:31689320/68‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGT > 1:1437501/1‑68TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGT < 1:738336/68‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCG < 1:18691088/67‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCG < 1:6501225/67‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:16236222/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:21079482/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:33668991/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:33548581/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:4641170/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:2292241/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:19594891/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:5364465/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:17749165/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:33421449/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:5650380/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:16150004/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:8421706/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:26452588/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:32056782/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:14541359/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:14105915/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:6684531/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:31425925/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:2902819/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGC < 1:13204202/66‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAG < 1:7193698/65‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAG < 1:29849516/65‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAG < 1:6797593/65‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAG < 1:3649129/65‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAG < 1:13293785/65‑1TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGGTGTCCGGCAGTTCCATCGACACCAGAGT > 1:32114891/1‑68 CGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTT > 1:1486928/1‑67 CGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTT > 1:14982282/1‑67 GTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC > 1:23206184/1‑68 TAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC > 1:20630905/1‑67 TAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC < 1:14639511/67‑1 TAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC > 1:33250239/1‑67 TAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC > 1:24407170/1‑67 TAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC > 1:29100275/1‑67 TAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC > 1:4362225/1‑67 TAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC < 1:21291666/67‑1 AGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCcc > 1:7653431/1‑66 TGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCGAAAGT < 1:7365609/68‑1 TGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCGAAAGT < 1:17604989/68‑1 CAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCGAAAGTATTCACAAAGTGGCTGAAC < 1:19746764/68‑1 GCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTG < 1:21135261/68‑1 GTCCGGCAGTTCCATCGACACCAGCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGC < 1:31352352/68‑1 CGGCAGTTCCATCGACACCAGCGTTTCCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGG < 1:23781089/68‑1 TCCATCGACACCAGCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCG < 1:23589187/66‑1 TCCATCGACACCAGCGATCCCGAAAGTATTCACATAGTGGCTGAACGCGTGGTAACGCTGGTGTCG < 1:28845334/66‑1 ACACCAGCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACT > 1:26102541/1‑67 AGCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGG > 1:10333436/1‑67 GCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGAC > 1:26796421/1‑68 GCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGAC > 1:12498389/1‑68 GCGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGA < 1:34320386/67‑1 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:30420171/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:11342589/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:7920059/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:12208521/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:1311058/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:13513833/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:17148380/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:17425262/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:19456376/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:5235571/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:20471886/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:21551719/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:21599121/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:22011524/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:30507321/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:324682/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:30650401/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:27694451/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:25616723/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:10101718/1‑68 CGTTACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACA > 1:31957171/1‑68 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:9126818/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:22991397/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:8015337/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:30560469/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:2698562/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:5460652/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:26557314/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:2034540/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:4155520/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:34670898/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:32879927/67‑1 TACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:32893821/67‑1 TACCGAAAGGATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAAC < 1:7500127/67‑1 ACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGT > 1:13640181/1‑68 ACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGT < 1:20242171/68‑1 ACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGT > 1:12309209/1‑68 ACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGT < 1:7902344/68‑1 ACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGT < 1:29490501/68‑1 ACCGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGT < 1:25502620/68‑1 TCCGGTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4049011‑4049082‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgttaccGAAAGTATTCACAAAGTGGCTGAACGCGTGGTAACGCTGGTGTCGATGGAACTGCCGGACAACGTGC < CP009273/4049111‑4049045 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |