| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4049082 | 319 (0.760) | 16 (0.040) | 12/96 | NT | 5.6% | coding (618/1050 nt) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG |
| ? | CP009273 | = 4049111 | 262 (0.730) | coding (589/1050 nt) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG | |||||
Only 100 of 392 total aligned reads displayed.
CGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCGGTCCGCC > CP009273/4049044‑4049178 | cGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTc > 1:17521462/1‑68 (MQ=255)cGCACGTTGTACGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAAAACTTTc > 1:32233756/1‑68 (MQ=255) aCGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCCCTTTGTGAATACTTTCggt < 1:511320‑M2/68‑4 (MQ=255) aCGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggt > 1:12309209‑M2/1‑65 (MQ=255) aCGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggt < 1:7902344‑M2/68‑4 (MQ=255) gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta < 1:32879927‑M2/67‑5 (MQ=255) gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta < 1:4155520‑M2/67‑5 (MQ=255) gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta < 1:2698562‑M2/67‑5 (MQ=255) gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta < 1:13579813‑M2/67‑5 (MQ=255) gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta < 1:8015337‑M2/67‑5 (MQ=255) tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg > 1:20471886‑M2/1‑61 (MQ=255) tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg > 1:17148380‑M2/1‑61 (MQ=255) tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg > 1:30420171‑M2/1‑61 (MQ=255) tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg > 1:21599121‑M2/1‑61 (MQ=255) tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg > 1:22011524‑M2/1‑61 (MQ=255) tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg > 1:10101718‑M2/1‑61 (MQ=255) ccGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacgct > 1:10333436‑M2/1‑58 (MQ=255) ccGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAAcgcg < 1:20938300/67‑1 (MQ=255) gtcAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt < 1:9467067/66‑1 (MQ=255) ggCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt < 1:23253190/68‑1 (MQ=255) ggCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt < 1:11413561/68‑1 (MQ=255) ggCAGTTCCATCGACACCAGCGTGACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt < 1:29453749/68‑1 (MQ=255) gCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt > 1:8404819/1‑67 (MQ=255) gCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt > 1:30967922/1‑67 (MQ=255) gCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt > 1:3188557/1‑67 (MQ=255) aGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTAcc > 1:12028537/1‑68 (MQ=255) aGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTAcc > 1:27463485/1‑68 (MQ=255) aGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTAcc > 1:1323315/1‑68 (MQ=255) aGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTAcc > 1:28698991/1‑68 (MQ=255) aGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTAcc > 1:1913885/1‑68 (MQ=255) tCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCgg < 1:9132479/67‑1 (MQ=255) aTCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAg < 1:31317437/68‑1 (MQ=255) cGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCa > 1:23570660/1‑65 (MQ=255) cGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCa > 1:25810822/1‑65 (MQ=255) cGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCa > 1:6621577/1‑65 (MQ=255) acacCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGc > 1:22446139/1‑68 (MQ=255) acacCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGc > 1:2505873/1‑68 (MQ=255) cacCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCg > 1:16578220/1‑68 (MQ=255) acCAGCGTTACCACGGGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg < 1:13748521/68‑1 (MQ=255) acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg < 1:11259025/68‑1 (MQ=255) acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg < 1:1304462/68‑1 (MQ=255) acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCg > 1:2598749/1‑67 (MQ=255) ccAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg > 1:22872950/1‑67 (MQ=255) ccAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg > 1:27194911/1‑67 (MQ=255) ccAGCGTTACAACGCGTTAAGCCACTTTGTGAATACTTTAGGTAACGCGCGTACCGGGCAGCAGCgg > 1:33823584/1‑67 (MQ=255) cAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGcc < 1:14552266/68‑1 (MQ=255) gCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGcccc > 1:14102657/1‑68 (MQ=255) cGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCa > 1:31621979/1‑68 (MQ=255) cGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCa > 1:14879201/1‑68 (MQ=255) cGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCa > 1:29915665/1‑68 (MQ=255) gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGcccc < 1:28045208/66‑1 (MQ=255) gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGcccc < 1:5324295/66‑1 (MQ=255) gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGcccc < 1:9842468/66‑1 (MQ=255) gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGcccc < 1:19764834/66‑1 (MQ=255) gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGccc < 1:10849627/65‑1 (MQ=255) gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGccc < 1:28284324/65‑1 (MQ=255) tACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAAc < 1:26611361/67‑1 (MQ=255) tACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAAc < 1:15690433/67‑1 (MQ=255) tACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAAc < 1:18855607/67‑1 (MQ=255) tACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAAc < 1:23784310/67‑1 (MQ=255) tACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACa > 1:20198927/1‑68 (MQ=255) aCCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAg > 1:17781915/1‑68 (MQ=255) cACGCGTTCAGCCACTTTGTGAGTACTTTCGGTAACGCACGTACCGGGCAGCTGCGGCCCCAACAGAc > 1:33134553/1‑68 (MQ=255) cACGCGTTCAGCCACTTTGTGAATACTTTCggtaacgctggtgtcgatggaactgccggacaacgtgc < 1:21135261‑M2/68‑39 (MQ=255) cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc > 1:17852606/1‑68 (MQ=255) cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc > 1:7260601/1‑68 (MQ=255) cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc > 1:34620014/1‑68 (MQ=255) cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc > 1:15969627/1‑68 (MQ=255) cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc > 1:24177743/1‑68 (MQ=255) cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc > 1:6482131/1‑68 (MQ=255) aCGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACg < 1:19611181/68‑1 (MQ=255) gcgTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACgg > 1:18041723/1‑67 (MQ=255) gcgTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACgg > 1:33437241/1‑67 (MQ=255) ccACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGa > 1:21801173/1‑68 (MQ=255) cACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAg < 1:24584022/66‑1 (MQ=255) cACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAg < 1:33033569/66‑1 (MQ=255) cACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAg < 1:29218904/66‑1 (MQ=255) cACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGa < 1:30695521/67‑1 (MQ=255) aCTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGCCCAGAtt > 1:34178664/1‑68 (MQ=255) aCTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGAtt > 1:25604372/1‑68 (MQ=255) aCTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGAtt > 1:6020500/1‑68 (MQ=255) aCTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGAtt > 1:7652578/1‑68 (MQ=255) aCTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGAtt > 1:34718505/1‑68 (MQ=255) aCTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGGCGACCAGAtt < 1:16372964/68‑1 (MQ=255) aCTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGCTCGACCAGAtt > 1:862040/1‑68 (MQ=255) aaTACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGcc > 1:4912943/1‑68 (MQ=255) aaTACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGcc > 1:5777444/1‑68 (MQ=255) aaTACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGcc > 1:25476728/1‑68 (MQ=255) aTACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCg < 1:18368640/68‑1 (MQ=255) aTACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCg < 1:8969355/68‑1 (MQ=255) tACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCgg > 1:24097226/1‑68 (MQ=255) aCTTTCggtaacgctggtgtcgatggaactgccggacaacgtgcggttgattcgtgattacgatccca < 1:7365609‑M2/68‑63 (MQ=255) aCTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCgg > 1:3792817/1‑67 (MQ=255) aCTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCgg > 1:10947131/1‑67 (MQ=255) aCTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCGGt < 1:12810158/68‑1 (MQ=255) aCTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCGGt < 1:15207674/68‑1 (MQ=255) aCTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGGCGACCAGATTTCGCAGCCGGt < 1:11569623/68‑1 (MQ=255) cTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCGGt > 1:23096757/1‑67 (MQ=255) ttCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCGGTCCg < 1:21455301/68‑1 (MQ=255) cGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCGGTCCGcc < 1:3074255/68‑1 (MQ=255) | CGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGACGGTCGACCAGATTTCGCAGCCGGTCCGCC > CP009273/4049044‑4049178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |