New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4049082319 (0.760)16 (0.040) 12/96 NT 5.6% coding (618/1050 nt) glnL sensory histidine kinase in two‑component regulatory system with GlnG
?CP009273 = 4049111 262 (0.730)coding (589/1050 nt) glnL sensory histidine kinase in two‑component regulatory system with GlnG

Only 100 of 527 total aligned reads displayed.

GTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAC  >  CP009273/4049015‑4049149
                                                                   |                                                                   
 tAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACC                                                                     >  1:24407170‑M1/1‑67 (MQ=255)
  aGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCa                                                                    <  1:15206760/67‑1 (MQ=255)
    gCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCAcgc                                                                 >  1:19642189/1‑68 (MQ=255)
     cTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCAcgc                                                                 <  1:34664323/67‑1 (MQ=255)
      tGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCAcgcg                                                                <  1:16869247/67‑1 (MQ=255)
      tGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCAcgcg                                                                <  1:20221236/67‑1 (MQ=255)
      tGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCAcgcg                                                                <  1:12972541/67‑1 (MQ=255)
      tGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCAcgcg                                                                <  1:30075656/67‑1 (MQ=255)
      tGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCAcgcg                                                                <  1:32706033/67‑1 (MQ=255)
         gATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACCCCAGCGTTACCATGCGTTCa                                                            >  1:25217449/1‑68 (MQ=255)
         gATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCa                                                            >  1:18054890/1‑68 (MQ=255)
         gATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCa                                                            >  1:21395306/1‑68 (MQ=255)
          aTCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCa                                                            >  1:5753944/1‑67 (MQ=255)
          aTCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCa                                                            >  1:9241806/1‑67 (MQ=255)
          aTCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCATTCa                                                            <  1:24671405/67‑1 (MQ=255)
           tCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGc                                                          <  1:3811261/68‑1 (MQ=255)
              tAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGcc                                                         >  1:25651780/1‑66 (MQ=255)
              tAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGcc                                                         >  1:33416671/1‑66 (MQ=255)
              tAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGcc                                                         >  1:17733128/1‑66 (MQ=255)
               aaTCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCAc                                                       <  1:3245634/67‑1 (MQ=255)
               aaTCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACt                                                      <  1:18809629/68‑1 (MQ=255)
                accACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACtt                                                     <  1:22473057/66‑1 (MQ=255)
                aTCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACtt                                                     <  1:23989764/68‑1 (MQ=255)
                aTCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACtt                                                     <  1:26215930/68‑1 (MQ=255)
                 tCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCgaaagtattcacaaagt                                                    <  1:32286747‑M1/68‑18 (MQ=255)
                  cACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTtg                                                   <  1:17479984/68‑1 (MQ=255)
                  cACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTtg                                                   <  1:34797049/68‑1 (MQ=255)
                  cACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTtg                                                   <  1:14757702/68‑1 (MQ=255)
                  cACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTtg                                                   <  1:24595394/68‑1 (MQ=255)
                  cACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTtg                                                   <  1:20545968/68‑1 (MQ=255)
                  cACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTtg                                                   <  1:26975356/68‑1 (MQ=255)
                      aaTCAACCGCACGTTGTCCTGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGaa                                               >  1:27031193/1‑68 (MQ=255)
                         cAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATAc                                            <  1:18507933/68‑1 (MQ=255)
                         cAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATAc                                            <  1:31287711/68‑1 (MQ=255)
                         cAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATAc                                            <  1:29188472/68‑1 (MQ=255)
                         cAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATAc                                            <  1:28164273/68‑1 (MQ=255)
                         cAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATAc                                            <  1:4556818/68‑1 (MQ=255)
                          aaCCGCACGTTGTCCGGCAGTGCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACt                                           <  1:12350111/68‑1 (MQ=255)
                           aCCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACtt                                          <  1:7580566/68‑1 (MQ=255)
                           aCCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACtt                                          <  1:15719385/68‑1 (MQ=255)
                             cGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTc                                        >  1:23489064/1‑68 (MQ=255)
                             cGCACGTTGTCCGGCAGTTACATCGACACCAGCGTTACAACGCGTTCAGCCACTTTGTGAATACTTTc                                        >  1:7348144/1‑68 (MQ=255)
                                aCGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCCCTTTGTGAATACTTTCggt                                     <  1:511320‑M2/68‑4 (MQ=255)
                                  gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta                                    <  1:32893821‑M2/67‑5 (MQ=255)
                                  gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta                                    <  1:30560469‑M2/67‑5 (MQ=255)
                                  gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta                                    <  1:22991397‑M2/67‑5 (MQ=255)
                                  gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta                                    <  1:2034540‑M2/67‑5 (MQ=255)
                                  gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta                                    <  1:14488846‑M2/67‑5 (MQ=255)
                                  gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta                                    <  1:8015337‑M2/67‑5 (MQ=255)
                                  gTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggta                                    <  1:9126818‑M2/67‑5 (MQ=255)
                                    tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg                                 >  1:31957171‑M2/1‑61 (MQ=255)
                                    tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg                                 >  1:22011524‑M2/1‑61 (MQ=255)
                                    tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg                                 >  1:21551719‑M2/1‑61 (MQ=255)
                                    tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg                                 >  1:13513833‑M2/1‑61 (MQ=255)
                                    tGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacg                                 >  1:27694451‑M2/1‑61 (MQ=255)
                                      tCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacgc                                <  1:34320386‑M2/67‑9 (MQ=255)
                                       ccGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCggtaacgct                               >  1:10333436‑M2/1‑58 (MQ=255)
                                       ccGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAAcgcg                               <  1:20938300/67‑1 (MQ=255)
                                       ccGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAAcgcg                               <  1:12738704/67‑1 (MQ=255)
                                        cGGCAGTTCCATCGACACCAGCGTTTCCgaaagtattcacaaagtggctgaacgcgtggtaacgctgg                             <  1:23781089‑M1/68‑41 (MQ=255)
                                         ggCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt                            <  1:11413561/68‑1 (MQ=255)
                                         ggCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt                            <  1:23253190/68‑1 (MQ=255)
                                         ggCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt                            <  1:28548517/68‑1 (MQ=255)
                                          gCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt                            >  1:6929343/1‑67 (MQ=255)
                                          gCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt                            >  1:19177262/1‑67 (MQ=255)
                                          gCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt                            >  1:5348233/1‑67 (MQ=255)
                                          gCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGt                            >  1:6168040/1‑67 (MQ=255)
                                            aGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTAcc                         >  1:1323315/1‑68 (MQ=255)
                                               tCCATCGACACCAGCGATCCCgaaagtattcacatagtggctgaacgcgtggtaacgctggtgtcg                        <  1:28845334‑M1/66‑46 (MQ=255)
                                                    cGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCa                    >  1:19841435/1‑65 (MQ=255)
                                                        acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACtt                                          >  1:21763572/1‑39 (MQ=255)
                                                        acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg             <  1:7705873/68‑1 (MQ=255)
                                                        acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg             <  1:13722483/68‑1 (MQ=255)
                                                        acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg             <  1:11259025/68‑1 (MQ=255)
                                                        acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg             <  1:22753888/68‑1 (MQ=255)
                                                        acCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCg              >  1:2598749/1‑67 (MQ=255)
                                                         ccAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTCCCGGGCAGCTGCgg             >  1:30852073/1‑67 (MQ=255)
                                                         ccAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCgg             >  1:10857680/1‑67 (MQ=255)
                                                            gCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGccc          >  1:16500858/1‑67 (MQ=255)
                                                             cGTTACCgaaagtattcacaaagtggctgaacgcgtggtaacgctggtgtcgatggaactgccggaca        >  1:30420171‑M1/1‑7 (MQ=255)
                                                             cGTTACCgaaagtattcacaaagtggctgaacgcgtggtaacgctggtgtcgatggaactgccggaca        >  1:7920059‑M1/1‑7 (MQ=255)
                                                             cGTTACCgaaagtattcacaaagtggctgaacgcgtggtaacgctggtgtcgatggaactgccggaca        >  1:10101718‑M1/1‑7 (MQ=255)
                                                             cGTTACCgaaagtattcacaaagtggctgaacgcgtggtaacgctggtgtagatggaaatgccgcaca        >  1:17284906‑M1/1‑7 (MQ=255)
                                                             cGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCa        >  1:26713789/1‑68 (MQ=255)
                                                             cGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCa        >  1:31476189/1‑68 (MQ=255)
                                                              gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGccc          <  1:8300480/65‑1 (MQ=255)
                                                              gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGccc          <  1:8762230/65‑1 (MQ=255)
                                                              gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGccc          <  1:17846166/65‑1 (MQ=255)
                                                              gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCa        >  1:12174667/1‑67 (MQ=255)
                                                              gTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCa        <  1:16185659/67‑1 (MQ=255)
                                                                tACCgaaagtattcacaaagtggctgaacgcgtggtaacgctggtgtcgatggaactgccggacaac      <  1:4155520‑M1/67‑64 (MQ=255)
                                                                tACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAAc      <  1:33910414/67‑1 (MQ=255)
                                                                tACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAAc      <  1:952355/67‑1 (MQ=255)
                                                                 aCCgaaagtattcacaaagtggctgaacgcgtggtaacgctggtgtcgatggaactgccggacaacgt    <  1:29490501‑M1/68‑66 (MQ=255)
                                                                   cACGCGTTCAGCCACTTTGTGAGTACTTTCGGTAACGCACGTACCGGGCAGCTGCGGCCCCAACAGAc  >  1:33134553/1‑68 (MQ=255)
                                                                   cACGCGTTCAGCCACTTTGTGAATACTTTCggtaacgctggtgtcgatggaactgccggacaacgtgc  <  1:21135261‑M2/68‑39 (MQ=255)
                                                                   cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc  >  1:6482131/1‑68 (MQ=255)
                                                                   cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc  >  1:27373515/1‑68 (MQ=255)
                                                                   cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc  >  1:31739244/1‑68 (MQ=255)
                                                                   cACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAc  >  1:25557936/1‑68 (MQ=255)
                                                                   |                                                                   
GTAGGCTGGGATCGTAATCACGAATCAACCGCACGTTGTCCGGCAGTTCCATCGACACCAGCGTTACCACGCGTTCAGCCACTTTGTGAATACTTTCGGTAACGCGCGTACCGGGCAGCTGCGGCCCCAACAGAC  >  CP009273/4049015‑4049149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.