| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 691855 = | 313 (0.750) | 38 (0.100) +TAATG |
3/102 | NT | 10.9% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | CP009273 | 691998 = | 369 (0.880) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
Only 100 of 408 total aligned reads displayed.
TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 | agcggtaaggaaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa < 1:25630608‑M1/1‑1 (MQ=255) gcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaa < 1:21528864‑M1/2‑1 (MQ=255) gcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaa < 1:3530960‑M1/2‑1 (MQ=255) cggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaaa < 1:24435456‑M1/3‑1 (MQ=255) cggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa > 1:1479454‑M1/66‑66 (MQ=255) aTCCGACATTGAAGGATAAGACGTGTCAACCGCGCATTCGACTTTGAATGACCGCAGAAAAGCaaaaa > 1:4622032/1‑68 (MQ=255) aTCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaaaaa > 1:33913441/1‑68 (MQ=255) taaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaaaaa > 1:29668665‑M1/63‑67 (MQ=255) taaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaaaaa > 1:26922332‑M1/63‑67 (MQ=255) ggcaccggtttttgataccggcattcccaggttcgaatcctcgtaccccagccacattaAAaaagatc < 1:2544780‑M1/9‑4 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccactttaTAAAAgca < 1:11173089‑M1/8‑2 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAagcac < 1:6786042‑M1/9‑3 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:16343332‑M1/9‑1 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:25762605‑M1/9‑1 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccaaattaATAAagcac < 1:16883317‑M1/9‑3 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcatcgtaccccagccacattaAAAAAGCTc < 1:2994490‑M1/9‑1 (MQ=255) gcaccggtttttgataccggcattcccaggttcgaatcctcgtaccccagccaaattaAAAAAGCTc < 1:13230153‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:894469‑M1/9‑1 (MQ=255) aCATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTc > 1:33360931/1‑67 (MQ=255) aCATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTc > 1:24022303/1‑67 (MQ=255) accggtttttgataccggcattcccaggttcgaatcctcgtaccccagccacataaAAAACGCtcggg < 1:6197885‑M1/12‑3 (MQ=255) accggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTCGc > 1:24758597‑M1/57‑67 (MQ=255) aTTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGcc > 1:23540370/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:34367975/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:9315427/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:1155740/1‑68 (MQ=255) aGGAAAAGACGTGACAACATCGCATTCCACAATCAATGAACGCAGAAAAGCAAAAAGCTCGCAGAAGc > 1:33099012/1‑68 (MQ=255) tAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAg < 1:12396082/67‑1 (MQ=255) tAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAg < 1:20576984/67‑1 (MQ=255) aaGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCt < 1:15952773/68‑1 (MQ=255) aaGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCt > 1:34091148/1‑68 (MQ=255) aaGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCt > 1:30849966/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:1087529/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:10135740/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:15093760/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:2487848/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:27403899/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:29428642/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:3073819/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:32242887/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:33509138/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:4350319/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:3833195/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:8234182/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:21227722/1‑68 (MQ=255) cGTGTCCACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:32496505/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACTCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:11701766/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:1294853/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:10412297/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:7518075/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:3121805/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:13462941/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:17371317/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:5893474/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:1415976/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:25274537/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:18233277/66‑1 (MQ=255) tCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAATCTCGCCGAAGCGAGCTTTTTTAAt > 1:23214199/1‑68 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:264975/1‑68 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:874120/68‑1 (MQ=255) cATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:11009290/1‑67 (MQ=255) aTCGCATTCTACATTGAATGAACGAATAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtt > 1:15308956/1‑65 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:14445194/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:22125688/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:31846209/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGc < 1:26292044/68‑1 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGc < 1:19827190/68‑1 (MQ=255) tCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:33775610/1‑65 (MQ=255) gCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGC‑TTTTTAATGTGGCTggg < 1:7969998/68‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCTCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:7340672/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg < 1:1898548/68‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg > 1:12706681/1‑68 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg < 1:17871600/68‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:31966607/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:3279480/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:15523039/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:21885722/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:22513831/67‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:16505073/1‑68 (MQ=255) tCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt > 1:5668614/1‑67 (MQ=255) cGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTAc > 1:1964295/1‑68 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:2755129/1‑68 (MQ=255) aTTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAgg > 1:30269533/1‑68 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa < 1:7732774/68‑1 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa < 1:28416919/68‑1 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa < 1:13736001/68‑1 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa < 1:14014314/68‑1 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:12075830/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:28122601/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:18034258/1‑68 (MQ=255) tgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGa > 1:20913655/1‑68 (MQ=255) cccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGaa < 1:4870749‑M1/54‑1 (MQ=255) aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc < 1:18545830/68‑1 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:22641027/1‑67 (MQ=255) gCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTc < 1:20079099/68‑1 (MQ=255) gccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCg < 1:17703618‑M1/59‑1 (MQ=255) aGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCg < 1:23036631/67‑1 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAAt > 1:19216900/1‑68 (MQ=255) gCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGcc > 1:20292451/1‑68 (MQ=255) aaaaaGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCgg > 1:31678485/1‑68 (MQ=255) | TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |