New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1823121 =198 (0.470)10 (0.030) 6/94 NT 5.5% coding (871/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 1823160 = 178 (0.510)coding (832/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 340 total aligned reads displayed.

TCATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCC  >  CP009273/1823057‑1823188
                                                                |                                                                   
tCATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCT                                                                   >  1:1168530‑M1/1‑67 (MQ=255)
tCATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCT                                                                   >  1:20422429‑M1/1‑67 (MQ=255)
gatatcgacgcggctgtccatctgaccattcagtcggcgtttgtcacagccggtcaacgctgcaCCt                                                                   <  1:26728919‑M1/3‑1 (MQ=255)
gatatcgacgcggctgtccatctgaccattcagtcggcgtttgtcacagccggtcaacgctgcaCCt                                                                   <  1:7377649‑M1/3‑1 (MQ=255)
 atatcgacgcggctgtccatctgaccattcagtcggcgtttgtcacagccggtcaacgctgcaCCTgc                                                                 <  1:26159869‑M1/5‑1 (MQ=255)
   atcgacgcggctgtccatctgaccattcagtcggcgtttgtcacagccggtcaacgctgcaCCTgcg                                                                <  1:27397035‑M1/6‑1 (MQ=255)
    cccAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                               >  1:22504480‑M1/1‑67 (MQ=255)
    cccAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                               >  1:5522952‑M1/1‑67 (MQ=255)
    cccAGTTGCCCGGCGTTAATCGCTGGCTGACGGAAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                               >  1:33234728‑M1/1‑67 (MQ=255)
     ccAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCC                                                              >  1:15468635‑M1/1‑67 (MQ=255)
      cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                            <  1:8212760/68‑1 (MQ=255)
      cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                            <  1:15343794/68‑1 (MQ=255)
      cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                            <  1:8052129/68‑1 (MQ=255)
      cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                            <  1:226375/68‑1 (MQ=255)
       aGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                            >  1:16341016/1‑67 (MQ=255)
          tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                        >  1:25391008/1‑68 (MQ=255)
          tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                        >  1:4112884/1‑68 (MQ=255)
          tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                        >  1:16023614/1‑68 (MQ=255)
          tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                        >  1:9242663/1‑68 (MQ=255)
           gCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCttt                                                       <  1:25253845/68‑1 (MQ=255)
             ccGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCTCCCTGCGCCCCGCTTTTc                                                     >  1:13862204/1‑68 (MQ=255)
               ggCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCa                                                    >  1:14685935/1‑67 (MQ=255)
                 cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                  <  1:30186698/67‑1 (MQ=255)
                 cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                  <  1:8433752/67‑1 (MQ=255)
                 cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                  <  1:31443867/67‑1 (MQ=255)
                  gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                <  1:24698636/68‑1 (MQ=255)
                  gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                <  1:3202093/68‑1 (MQ=255)
                  gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                <  1:19282478/68‑1 (MQ=255)
                    tAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATa                                              <  1:32925744/68‑1 (MQ=255)
                      tgaccattcagtcggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATaa                                             <  1:18723182‑M1/25‑1 (MQ=255)
                       tCGCTGGCTGACGGCACCCAGACTAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                           >  1:945052/1‑68 (MQ=255)
                       tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                           >  1:7866821/1‑68 (MQ=255)
                       tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                           >  1:29104556/1‑68 (MQ=255)
                       tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                           >  1:17341994/1‑68 (MQ=255)
                       tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                           >  1:27095458/1‑68 (MQ=255)
                       tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                           >  1:14542761/1‑68 (MQ=255)
                           tGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCg                                       >  1:33630240‑M2/1‑67 (MQ=255)
                            ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg                                      <  1:1316109‑M2/68‑3 (MQ=255)
                               tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                   >  1:22947836‑M2/1‑63 (MQ=255)
                               tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                   >  1:34575501‑M2/1‑63 (MQ=255)
                               tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                   >  1:9700972‑M2/1‑63 (MQ=255)
                               tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                    >  1:20807285‑M2/1‑63 (MQ=255)
                                  cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                 >  1:11371817‑M2/1‑60 (MQ=255)
                                   ggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAgg                               >  1:34089178‑M1/30‑68 (MQ=255)
                                   ggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAgg                               >  1:25673570‑M1/30‑68 (MQ=255)
                                   ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                               >  1:17035938‑M2/1‑59 (MQ=255)
                                   ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                               >  1:455496‑M2/1‑59 (MQ=255)
                                   ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                               >  1:26910605‑M2/1‑59 (MQ=255)
                                     cgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGcagggc                             <  1:24560611‑M1/41‑3 (MQ=255)
                                     cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                              <  1:10323014/67‑1 (MQ=255)
                                     cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                              <  1:4371453/67‑1 (MQ=255)
                                     cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                              <  1:18384159/67‑1 (MQ=255)
                                     cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                              <  1:21161685/67‑1 (MQ=255)
                                        ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgat                          >  1:6602671‑M2/1‑54 (MQ=255)
                                         cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                         <  1:13743866/68‑1 (MQ=255)
                                         cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                         <  1:32278629/68‑1 (MQ=255)
                                            aCGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                      >  1:32501952/1‑68 (MQ=255)
                                            aCGAGCAAGAAACGCATCGCCCTGCGCCCCGCCTCTCAGCAATAAACGGCgggcgcagggcgatgcgt                      >  1:7557861‑M2/1‑50 (MQ=255)
                                             cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCg                        <  1:12805546/65‑1 (MQ=255)
                                             cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                      <  1:6831203/67‑1 (MQ=255)
                                             cGACCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcg                       >  1:28063049‑M2/1‑49 (MQ=255)
                                              gAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                     >  1:24876373/1‑67 (MQ=255)
                                               aGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGa                    >  1:22175580/1‑67 (MQ=255)
                                                gccggtcaacgctgccCCTGCGCCCCGCTTTTCCGCAATAAACGGCGGGCGCAGGTGCCGCgttgccc                  <  1:28445542‑M1/52‑4 (MQ=255)
                                                gccggtcaacgcggcaCCTGCGCCCCGCGTTTCAGCCATAAACGGCGGGCGCAGGTGCAGCgttggcc                  <  1:32552753‑M1/52‑4 (MQ=255)
                                                  aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                <  1:22294823/68‑1 (MQ=255)
                                                  aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                <  1:5263394/68‑1 (MQ=255)
                                                  aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                 >  1:6537318/1‑67 (MQ=255)
                                                  aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                 >  1:28345571/1‑67 (MQ=255)
                                                  aaGAAACGCATCGCCCTGCGCCCCGCTTTGCAGCAATAAACGCCGGGCGCAGGTGCAGCGTTGACCg                 >  1:23630811/1‑67 (MQ=255)
                                                   aGAAACGCATCGCCCTGCTCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGTTGCAGCGTTGACCGGc               <  1:21336773/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:7089288/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:16633975/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:27829839/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:3584033/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:10010051/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:1754967/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:33041293/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:28694316/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:8755762/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:30832591/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:29275516/68‑1 (MQ=255)
                                                   aGAAACGCATCGCCCTGCGCCCCGCTTTTCACCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc               <  1:19574745/68‑1 (MQ=255)
                                                      aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcg            >  1:18007291‑M2/1‑40 (MQ=255)
                                                      aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt            >  1:19097008/1‑68 (MQ=255)
                                                      aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCt              <  1:893402/66‑1 (MQ=255)
                                                        cGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcg            >  1:14422608‑M1/1‑17 (MQ=255)
                                                        cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtc          >  1:20457104‑M2/1‑38 (MQ=255)
                                                        cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCTGGTGCAGCGTTGACCGGCtgtg           >  1:29828950/1‑67 (MQ=255)
                                                        cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa          <  1:34846176/68‑1 (MQ=255)
                                                        cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa          <  1:20006033/68‑1 (MQ=255)
                                                           aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcggttcttgctcgtctgg       >  1:13578090‑M1/1‑14 (MQ=255)
                                                           aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa       >  1:24077843/1‑68 (MQ=255)
                                                             gcaCCTGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACAAAc     <  1:18748708‑M1/65‑1 (MQ=255)
                                                              gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc     >  1:10736897/1‑67 (MQ=255)
                                                               cccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttg    >  1:25102697‑M1/1‑10 (MQ=255)
                                                               cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg    >  1:23052901/1‑67 (MQ=255)
                                                               accTGCGCCCCGCTTTTAAGGAATAAACGGCGGGCGCCGGTGGAGCGTTGACCGGGGGTGCCAAGCg    >  1:13451116/2‑67 (MQ=255)
                                                               aCCTGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGGGACAAACg    <  1:11794583‑M1/66‑1 (MQ=255)
                                                                ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc  >  1:30022947‑M1/1‑9 (MQ=255)
                                                                |                                                                   
TCATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCC  >  CP009273/1823057‑1823188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.