| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1823121 = | 198 (0.470) | 10 (0.030) | 6/94 | NT | 5.5% | coding (871/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | 1823160 = | 178 (0.510) | coding (832/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
Only 100 of 322 total aligned reads displayed.
CAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCC > CP009273/1823094‑1823227 | cgtttgtcccagccgggcaacgctgcacctgcgcccgccgtttattgctgaaacgcggggcgcaggt < 1:11794583‑M2/1‑1 (MQ=255)cgtttgtcacagccggtcaacgctgcacctgcgcccgccgtttattgctgaaaagcggggcgcaggt < 1:795408‑M2/1‑1 (MQ=255)cgtttgtcacacccgggcaacgcggcacctgcgcccgccgtttattgctgaaaagcggggcgcaggt < 1:29327040‑M2/1‑1 (MQ=255)cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:34709493/67‑1 (MQ=255)cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:17170503/67‑1 (MQ=255)cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:17403214/67‑1 (MQ=255)cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:18384159/67‑1 (MQ=255)cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:4371453/67‑1 (MQ=255)cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:28610607/67‑1 (MQ=255) aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa > 1:19124532/1‑68 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:13743866/68‑1 (MQ=255) aCGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt > 1:23964018/1‑68 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCg < 1:12805546/65‑1 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt < 1:6831203/67‑1 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg > 1:20628313/1‑68 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg > 1:1153604/1‑68 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg > 1:17552266/1‑68 (MQ=255) aGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGa > 1:22175580/1‑67 (MQ=255) aGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa > 1:10483891/1‑67 (MQ=255) gccggtcaacgctgccCCTGCGCCCCGCTTTTCCGCAATAAACGGCGGGCGCAGGTGCCGCgttgccc < 1:28445542‑M1/52‑4 (MQ=255) aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg < 1:30964133/68‑1 (MQ=255) aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg < 1:32460208/68‑1 (MQ=255) ggccaacgctgcacctgcgcccgccgtttatggctgaaacgcggggcgcaggTGCCGCGTTGACCGGc < 1:32552753‑M2/16‑1 (MQ=255) aGAAACGCATCGCCCTGCTCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGTTGCAGCGTTGACCGGc < 1:21336773/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:3954108/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:2232213/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:22413249/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:32954313/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:10010051/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:7089288/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:16116218/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:5287440/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:16636706/68‑1 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt > 1:16350030/1‑68 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt > 1:8169061/1‑68 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa < 1:28834120/68‑1 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa < 1:22948876/68‑1 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa < 1:34846176/68‑1 (MQ=255) cGCAGCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa < 1:8361228/68‑1 (MQ=255) gctgcaCCTGCGCCCCCCGTTTGAGCAATAAACGGCGGGCGCAGGTGCAGCGGTGACCGGCTGGGACa < 1:1496735‑M1/62‑1 (MQ=255) cATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACa > 1:28237793/1‑68 (MQ=255) aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa > 1:8515702/1‑68 (MQ=255) aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACa < 1:7603141/67‑1 (MQ=255) gccctgcgcccgccgtttattgctgaaaagcggggcgcaggTGCAGCGTTGACCGGCTGTGACAAACg < 1:24560611‑M2/27‑1 (MQ=255) cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg > 1:23052901/1‑67 (MQ=255) cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg > 1:30048641/1‑67 (MQ=255) aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg < 1:17294705‑M1/66‑1 (MQ=255) aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCGGTGACAAACg < 1:29869179‑M1/66‑1 (MQ=255) cctgcgcccgccgtttattgctgaaaagcggggcgcaggTGCAGCGTTGACCGGCTGTGACAAACGcc > 1:34089178‑M2/40‑68 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc < 1:25075367‑M1/68‑1 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc < 1:31823612‑M1/68‑1 (MQ=255) TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGa > 1:33233200‑M1/1‑68 (MQ=255) CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGTCAAACGCCg < 1:20497194‑M1/65‑1 (MQ=255) CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:23839152‑M1/65‑1 (MQ=255) CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:23151427‑M1/65‑1 (MQ=255) gcccgccgtttattgctgaaaagcggggcgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg > 1:13085038‑M2/35‑68 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg > 1:21003129‑M1/1‑68 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg > 1:13678679‑M1/1‑68 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:13319663‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg > 1:30283186‑M1/1‑68 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:8758087‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:22675473‑M1/68‑1 (MQ=255) CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa < 1:24763267‑M1/68‑1 (MQ=255) CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa < 1:27750779‑M1/68‑1 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGTCCGGCTGTGACAAACGCCGACTGaa > 1:23394782‑M1/1‑68 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGaa > 1:15224068‑M1/1‑68 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa > 1:29641419‑M1/1‑67 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa > 1:5193377‑M1/1‑67 (MQ=255) gCTTTTCCGCAATACACGGCGGGCGCAGGTGCCGAGTGGACCGGCTGGGACAAACGCCGACTGAATgt > 1:6568563/1‑67 (MQ=255) gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg > 1:16954689/1‑68 (MQ=255) gCTTTTCAGCAATAAAAGGCGGGCGCAGGTGCCGCGGGGACCGGCTGGGACAACCGCCGACTGAATgg > 1:6529318/1‑68 (MQ=255) ttttCCGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt < 1:25860726/67‑1 (MQ=255) ttttCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt < 1:11178621/67‑1 (MQ=255) ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt < 1:12378304/67‑1 (MQ=255) ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt < 1:32088038/67‑1 (MQ=255) tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa < 1:13493289/68‑1 (MQ=255) tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa < 1:4153181/68‑1 (MQ=255) tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa > 1:32256848/1‑68 (MQ=255) ttattgctgaaaagcggggcgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa < 1:18723182‑M2/42‑1 (MQ=255) cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt < 1:5595710/68‑1 (MQ=255) cAGCAATAAACGGCGCGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt < 1:19033273/68‑1 (MQ=255) gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg > 1:19567249/1‑68 (MQ=255) aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc > 1:1207399/1‑68 (MQ=255) aaaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAg > 1:6318459/1‑67 (MQ=255) aaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc < 1:9387231/68‑1 (MQ=255) aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc > 1:2789316/1‑67 (MQ=255) ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg > 1:1874940/1‑68 (MQ=255) ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg > 1:31785883/1‑68 (MQ=255) ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg < 1:8824466/68‑1 (MQ=255) gcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg > 1:20081809/1‑67 (MQ=255) cgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGat < 1:21468598‑M2/61‑1 (MQ=255) cgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGat < 1:14452723‑M2/61‑1 (MQ=255) cgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGat < 1:26961459‑M2/61‑1 (MQ=255) cgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGat < 1:27397035‑M2/61‑1 (MQ=255) gcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGatat < 1:26159869‑M2/63‑1 (MQ=255) aggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATc < 1:33407276‑M2/64‑1 (MQ=255) aggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATc < 1:2556296‑M2/64‑1 (MQ=255) gTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCg > 1:10961941‑M2/2‑67 (MQ=255) tGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATcc < 1:15730163/65‑1 (MQ=255) tGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCg < 1:24186189/66‑1 (MQ=255) | CAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCC > CP009273/1823094‑1823227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |